Differences between revisions 5 and 6
Deletions are marked like this. Additions are marked like this.
Line 49: Line 49:
Alternatively:
||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk ||Mert Sabuncu ||
||10:00 - 10:30 ||QDEC demonstration ||demo ||Nick Schmansky ||
||10:30 - 10:50 ||'''break''' || || ||
||10:50 - 11:50 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||
||10:50 - 11:50 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||
||11:50 - 12:50 ||'''Lunch''' ||-- ||-- ||
||''12:15 - 12:45'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' ||''talk'' ||''Andre van der Kouwe'' ||
||12:50 - 1:20 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] ||talk ||Bruce Fischl ||
||1:20 - 2:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve ||
||2:20 - 2:50 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||2:50 - 3:10 ||'''break''' || || ||
||3:10 - 3:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||
||3:40 - 4:30 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||
||4:30 - 5:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve ||
||5:30 - 6:15 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
Line 68: Line 51:
||9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fmri.april2011.pdf|Basics of fMRI Analysis|&do=get]] ||talk ||Doug Greve ||
||10:00 - 10:20 ||'''break''' || || ||
||10:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve ||
||11:40 - 12:40 ||[[FsFastTutorialV5.1|FSFAST Tutorial]] ||tutorial ||staff ||
||12:40 - 1:40 ||'''Lunch''' ||-- ||-- ||
||''1:10 - 1:40'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/motion_correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' ||
||1:40 - 2:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki ||
||2:40 - 3:25 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||
||3:25 - 3:45 ||'''break''' & [[https://spreadsheets.google.com/viewform?formkey=dGlVV3Bzb296bnBWN3lBc3l5U3lPUGc6MA|Evaluation]] || || ||
||3:45 - 4:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki ||
||4:15 - 5:00 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||5:00 - 5:30 ||Question and Answer Session, FsQuiz ||talk ||staff ||
||9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fmri.april2011.pdf|Basics of fMRI Analysis|&do=get]] ||talk ||Doug Greve || '''Alternative''': Advice on Processed Data || one-on-one || staff||
||10:00 - 10:20 ||'''break''' || || || || || ||
||10:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve || '''Alternative''': Advice on Processed Data || one-on-one || staff||
||11:40 - 12:40 ||[[FsFastTutorialV5.1|FSFAST Tutorial]] ||tutorial ||staff || || || ||
||12:40 - 1:40 ||'''Lunch''' ||-- ||-- || || || ||
||''1:10 - 1:40'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/motion_correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' || || || ||
||1:40 - 2:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki || '''Alternative''': Advice on Processed Data || one-on-one || staff||
||2:40 - 3:25 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff || || || ||
||3:25 - 3:45 ||'''break''' & [[https://spreadsheets.google.com/viewform?formkey=dGlVV3Bzb296bnBWN3lBc3l5U3lPUGc6MA|Evaluation]] || || || || || ||
||3:45 - 4:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki || '''Alternative''': Advice on Processed Data || one-on-one || staff||
||4:15 - 5:00 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || || || ||
||5:00 - 5:30 ||Question and Answer Session, FsQuiz ||talk ||staff || || || ||

FreeSurfer Course, December 12-14, 2011

MGH, Charlestown Navy Yard, Building 149, Conference Room A

Monday, December 12th - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting

Time

Title

Type

Lecturer

8:00 - 8:30

optional - Unix Tutorial for FreeSurfer Users online practice

tutorial

Allison Stevens

8:30 - 9:00

optional - Intro to FreeSurfer Jargon

talk

Allison Stevens

8:30 - 9:00

Course Registration

sign-in

staff

9:00 - 9:30

Introduction to Freesurfer

talk

Bruce Fischl

9:30 - 10:30

Analyzing the Individual Subject

talk

Doug Greve

10:30 - 10:50

break

10:50 - 11:20

Tkmedit/Tksurfer demonstration

demo

Doug Greve

11:20 - 11:50

Interaction with Individual Subject Data Tutorial

tutorial

staff

11:50 - 12:30

Surface-based Smoothing/Surface-based Registration

talk

Doug Greve

12:30 - 1:30

Lunch (Suggestions)

--

--

1:00 - 1:30

Optional Lunch Talk- A Non-physicist's Intro to MR SpinBench

talk

Dylan Tisdall

1:30 - 2:15

Registration Methods

talk

Lilla Zollei

2:15- 2:55

Failure Modes

talk

Bruce Fischl

2:55 - 3:15

break

3:15 - 3:35

Troubleshooting Demonstration

demo

Allison

3:35 - 4:35

Troubleshooting Tutorial

tutorial

staff

4:35 - 5:30

Quality Checking a Recon

demo

Allison Stevens

5:30 -

optional - FreeSurfer Installation on Personal Laptops

one-on-one

staff

5:30 -

optional - Start Processing Your Own Data

one-on-one

staff

Boston Beer Works location information here and here.
Meet us at 6:40pm at the front of Building 149 (the entrance on the opposite side of the building from where the Course is held).
If you miss us, we are taking the 6:45pm MGH/Navy Yard shuttle to North Station (the next one departs at 6:45pm). From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.

Tuesday, December 13th - Group Analysis/ ROIs / Registration / Diffusion

Time

Title

Type

Lecturer

9:00 - 10:00

ROI Analysis

talk

Doug Greve

10:00 - 10:30

ROI Analysis Tutorial

tutorial

staff

10:30 - 10:50

break

10:50 - 11:20

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

11:20 - 12:10

Longitudinal Tutorial

tutorial

staff

12:10 - 1:10

Lunch

--

--

12:40 - 1:10

Optional Lunch Talk- MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

1:10 - 1:40

Future Directions: Inferring architectonic boundaries from in-vivo MRI

talk

Bruce Fischl

1:40 - 2:40

Multi-Modal Integration

talk

Doug Greve

2:40 - 3:00

break

3:00 - 3:45

Multi-Modal Integration Tutorial

tutorial

staff

3:45 - 4:45

Group Analysis / GLM / Multiple Comparisons

talk

Mert Sabuncu

4:45 - 5:15

QDEC demonstration

demo

Nick Schmansky

5:15 - 6:15

Group Analysis / Multiple Comparisons - mri_glmfit Tutorial

tutorial

staff

5:15 - 6:15

Group Analysis - qdec Tutorial

tutorial

staff

Wednesday, December 14th - Multi-Modal / Future Directions / fMRI / Q&A

9:00 - 10:00

Basics of fMRI Analysis

talk

Doug Greve

Alternative: Advice on Processed Data

one-on-one

staff

10:00 - 10:20

break

10:20 - 11:40

FSFAST

talk

Doug Greve

Alternative: Advice on Processed Data

one-on-one

staff

11:40 - 12:40

FSFAST Tutorial

tutorial

staff

12:40 - 1:40

Lunch

--

--

1:10 - 1:40

Optional Lunch Talk- Motion-compensated neuroanatomical imaging

talk

Dylan Tisdall

1:40 - 2:40

Introduction to Diffusion MRI

talk

Anastasia Yendiki

Alternative: Advice on Processed Data

one-on-one

staff

2:40 - 3:25

Diffusion Processing Tutorial

tutorial

staff

3:25 - 3:45

break & Evaluation

3:45 - 4:15

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

Alternative: Advice on Processed Data

one-on-one

staff

4:15 - 5:00

Tracula Tutorial

tutorial

staff

5:00 - 5:30

Question and Answer Session, FsQuiz

talk

staff

FsTutorial/Dec2011CourseSchedule (last edited 2011-12-14 13:58:53 by NickSchmansky)