Diff for "FsTutorial/Nov2013CourseSchedule"

Differences between revisions 4 and 5

FreeSurfer Course, November 4 - 6, 2013
MGH, Charlestown Navy Yard, Building 114, Room D1

8:30 - 10am Registration Desk is open

Monday, Nov 4th - Introduction / Single Subject Analysis /Troubleshooting

Time	Title	Type	Lecturer
9:00 - 9:30	optional - Unix Tutorial for FreeSurfer Users	tutorial	Allison Stevens
9:30 - 9:45	optional - Intro to FreeSurfer Jargon	talk	Allison Stevens
9:45 - 10:00	break
10:00 - 10:30	Introduction to Freesurfer	talk	Bruce Fischl
10:30 - 11:30	Analyzing the Individual Subject	talk	Doug Greve
11:30 - 11:50	break
11:50 - 12:30	optional - A Non-physicist's Intro to MR SpinBench	talk	Dylan Tisdall
12:30 - 1:30	Lunch (Suggestions for where to eat)	--	--
1:30 - 2:00	Freeview/Tksurfer demonstration	demo	Doug Greve
2:00 - 2:30	Interaction with Individual Subject Data Tutorial	tutorial	staff
2:30 - 3:00	FreeSurfer Troubleshooting	talk	Allison Stevens
3:00 - 3:20	break
3:20 - 4:20	Quality Checking a Recon	demo	Allison Stevens
4:20 - 5:20	Troubleshooting Tutorial	tutorial	staff

Tuesday, Nov 5th - Group Analysis / ROI Analysis / Multimodal

Time	Title	Type	Lecturer
9:00 - 9:40	Surface-based Analysis: Intersubject Smoothing & Registration	talk	Doug Greve
9:40 - 10:20	Group Analysis	talk	Eugenio Iglesias
10:20 - 10:40	break
10:40 - 11:20	Group Analysis - mri_glmfit Tutorial	tutorial	staff
11:20 - 11:40	Multiple Comparisons	talk	Eugenio Iglesias
11:40 - 12:00	QDEC demonstration	demo	Nick Schmansky
12:00 - 1:00	Lunch	--	--
1:00 - 1:20	Group Analysis / Multiple Comparisons Tutorial	tutorial	staff
1:00 - 2:00	QDEC Tutorial	tutorial	staff
2:00 - 3:00	ROI Analysis	talk	Doug Greve
3:00 - 3:20	break
3:20 - 3:50	ROI Analysis Tutorial	tutorial	staff
3:50 - 4:20	Multi-Modal Integration	talk	Doug Greve
4:20 - 5:20	Multi-Modal Integration Tutorial	tutorial	staff

Boston Beer Works location information here and here.
Meet us at 6:10pm at the front of Building 149 (map to be provided soon).
If you miss us, we are taking the 6:15pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).
From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.

Wednesday, Nov 6th - Diffusion / Multimodal / Future Directions / Q&A

Time	Title	Type	Lecturer
9:00 - 9:40	Introduction to Diffusion MRI	talk	Anastasia Yendiki
9:40 - 10:10	Diffusion Processing Tutorial	tutorial	staff
10:10 - 10:40	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
10:40 - 11:00	break
11:00 - 11:45	Tracula Tutorial	tutorial	staff
11:45 - 12:15	Multi-Modal Integration, Part 2	talk	Doug Greve
12:15 - 1:15	Lunch	--	--
1:15 - 1:45	optional - Motion-compensated neuroanatomical imaging	talk	Dylan Tisdall
1:45 - 2:00	Multi-Modal Integration Tutorial	tutorial	staff
2:00 - 2:30	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
2:30 - 3:15	Longitudinal Tutorial	tutorial	staff
3:15 - 3:45	optional technical talk - MRI Acquisition Methods for Morphometry	talk	Andre van der Kouwe
3:45 - 4:10	optional technical talk - Registration Methods	talk	Lilla Zollei
4:10 - 4:45	break & Evaluation
4:45 - 5:15	Future Directions	talk	Anastasia Yendiki
5:15 - 5:30	Question and Answer Session (Answers to online questions here), FsQuiz	talk	staff

FsTutorial/Nov2013CourseSchedule (last edited 2017-09-26 11:35:14 by MorganFogarty)

-Deletions are marked like this.
+Additions are marked like this.
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-:30 - 10am Registration Desk is open
+'''8:30 - 10am Registration Desk is open'''
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-=== Monday, Nov 4th - Introduction / Single Subject / Registration / Troubleshooting ===
+=== Monday, Nov 4th - Introduction / Single Subject Analysis /Troubleshooting ===
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-=== Tuesday, Nov 5th - ROIs / Longitudinal / Multimodal / Group Analysis ===
+=== Tuesday, Nov 5th - Group Analysis / ROI Analysis / Multimodal ===
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-||9:40 - 10:20  ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve ||
+||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis]] ||talk || Eugenio Iglesias ||
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-||10:40 - 11:10  ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||



||10:30 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || Melanie Ganz ||

||11:30 - 11:50 ||QDEC demonstration ||demo ||Nick Schmansky ||

||11:50 - 12:50 ||'''Lunch''' ||-- ||-- ||

||''12:20 - 12:50'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' ||''talk'' ||''Andre van der Kouwe'' ||

||12:50 - 1:50 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||

||12:50 - 1:50 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||

||1:50 - 2:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||

||2:20 - 2:40 ||'''break''' || ||

||2:40 - 3:40 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||

||3:40 - 4:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve ||

||4:40 - 5:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei ||

||5:00 - 5:45 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
+||10:40 - 11:20 ||[[FsTutorial/GroupAnalysis|Group Analysis - mri_glmfit Tutorial]] ||tutorial ||staff ||

||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Multiple Comparisons]] ||talk || Eugenio Iglesias ||

||11:40 - 12:00 ||QDEC demonstration ||demo ||Nick Schmansky ||

||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||

||1:00 - 1:20 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons Tutorial]] ||tutorial ||staff ||

||1:00 - 2:00 ||[[FsTutorial/QdecGroupAnalysis|QDEC Tutorial]] ||tutorial ||staff ||

||2:00 - 3:00  ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve ||

||3:00 - 3:20 ||'''break''' || ||

||3:20 - 3:50  ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||

||3:50 - 4:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve ||

||4:20 - 5:20 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
-Line 60:
+Line 57:
-=== Wednesday, Nov 6th - fMRI / Diffusion / Q&A ===
+=== Wednesday, Nov 6th - Diffusion / Multimodal / Future Directions / Q&A ===
-Line 67:
+Line 64:
-||2:50 - 3:10 ||'''break''' || ||

||3:10 - 3:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki ||

||3:40 - 4:25 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||



||12:40 - 1:40 ||'''Lunch''' ||-- ||-- ||

||''1:10 - 1:40'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' ||

||2:50 - 3:10 ||'''break''' & Evaluation|| ||

||4:25 - 5:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSuferCourse_OCT.pdf|Future Directions - Optical Coherence Tomography]]  ||talk || Caroline Magnain ||

||5:00 - 5:30 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff ||
+||10:10 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki ||

||10:40 - 11:00 ||'''break''' || ||

||11:00 - 11:45 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||

||11:45 - 12:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration, Part 2|&do=get]] ||talk ||Doug Greve ||

||12:15 - 1:15 ||'''Lunch''' ||-- ||-- ||

||1:15 - 1:45 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]] ||talk ||Dylan Tisdall ||

||1:45 - 2:00||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||

||2:00 - 2:30|| [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||

||2:30 - 3:15 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||

||3:15 - 3:45 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] ||talk ||Andre van der Kouwe ||

||3:45 - 4:10 || '''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei ||

||4:10 - 4:45 ||'''break''' & Evaluation|| ||

||4:45 - 5:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSuferCourse_OCT.pdf|Future Directions]]  ||talk || Anastasia Yendiki ||

||5:15 - 5:30 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff ||