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||10:30 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || Doug Greve ||
||11:00 - 11:20 ||'''break''' || || ||
||11:20 - 12:00
||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||talk ||Dylan Tisdall ||
||12:00 - 1:00 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg| (Suggestions for where to eat)]]||-- ||-- ||
||1:00 - 1:30 ||Freeview/Tksurfer demonstration ||demo ||Doug Greve ||
||1:30 - 2:00 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2011.jpg|staff]] ||
||2:00 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.AS.ppt|FreeSurfer Troubleshooting|&do=get]] ||talk || Bruce Fischl ||
||2:30 - 2:50 ||'''break''' || || ||
||2:50 - 3:50 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt | Quality Checking a Recon]] ||demo ||Allison Stevens ||
||3:50 - 4:50 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
||10:30 - 11:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || Doug Greve ||
||11:15 - 11:35 ||'''break''' || || ||
||11:35 - 1
2:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||talk ||Dylan Tisdall ||
||12:15 - 1:15 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg| (Suggestions for where to eat)]]||-- ||-- ||
||1:15 - 1:45 ||Freeview/Tksurfer demonstration ||demo ||Doug Greve ||
||1:45 - 2:15 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2011.jpg|staff]] ||
||2:15 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.AS.ppt|FreeSurfer Troubleshooting|&do=get]] ||talk || Bruce Fischl ||
||2:45 - 3:00 ||'''break''' || || ||
||3:00 - 4:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt | Quality Checking a Recon]] ||demo ||Allison Stevens ||
||4:00 - 5:00 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||

FreeSurfer Course, November 4 - 6, 2013
MGH, Charlestown Navy Yard, Building 114, Room D1

8:00 - 9:30am Registration Desk Open

Monday, Nov 4th - Introduction / Single Subject Analysis /Troubleshooting

Time

Title

Type

Lecturer

8:30 - 9:00

optional - Unix Tutorial for FreeSurfer Users

tutorial

Allison Stevens

9:00 - 9:15

optional - Intro to FreeSurfer Jargon

talk

Allison Stevens

9:15 - 9:30

break

9:30 - 10:00

Introduction to Freesurfer

talk

Bruce Fischl

10:30 - 11:15

Analyzing the Individual Subject

talk

Doug Greve

11:15 - 11:35

break

11:35 - 12:15

optional - A Non-physicist's Intro to MR SpinBench

talk

Dylan Tisdall

12:15 - 1:15

Lunch (Suggestions for where to eat)

--

--

1:15 - 1:45

Freeview/Tksurfer demonstration

demo

Doug Greve

1:45 - 2:15

Interaction with Individual Subject Data Tutorial

tutorial

staff

2:15 - 2:45

FreeSurfer Troubleshooting

talk

Bruce Fischl

2:45 - 3:00

break

3:00 - 4:00

Quality Checking a Recon

demo

Allison Stevens

4:00 - 5:00

Troubleshooting Tutorial

tutorial

staff

Tuesday, Nov 5th - Group Analysis / ROI Analysis / Multimodal

Time

Title

Type

Lecturer

9:00 - 9:40

Surface-based Analysis: Intersubject Smoothing & Registration

talk

Doug Greve

9:40 - 10:20

Group Analysis

talk

Eugenio Iglesias

10:20 - 10:40

break

10:40 - 11:20

Group Analysis - mri_glmfit Tutorial

tutorial

staff

11:20 - 11:40

Multiple Comparisons

talk

Eugenio Iglesias

11:40 - 12:00

QDEC demonstration

demo

Nick Schmansky

12:00 - 1:00

Lunch

--

--

1:00 - 1:20

Group Analysis / Multiple Comparisons Tutorial

tutorial

staff

1:00 - 2:00

QDEC Tutorial

tutorial

staff

2:00 - 3:00

ROI Analysis

talk

Doug Greve

3:00 - 3:20

break

3:20 - 3:50

ROI Analysis Tutorial

tutorial

staff

3:50 - 4:20

Multi-Modal Integration

talk

Doug Greve

4:20 - 5:20

Multi-Modal Integration Tutorial

tutorial

staff

Boston Beer Works location information here and here.
Meet us at 6:10pm at the front of Building 149 (map to be provided soon).
If you miss us, we are taking the 6:15pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).
From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.

Wednesday, Nov 6th - Diffusion / Multimodal / Future Directions / Q&A

Time

Title

Type

Lecturer

9:00 - 9:40

Introduction to Diffusion MRI

talk

Anastasia Yendiki

9:40 - 10:10

Diffusion Processing Tutorial

tutorial

staff

10:10 - 10:40

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

10:40 - 11:00

break

11:00 - 11:45

Tracula Tutorial

tutorial

staff

11:45 - 12:15

Multi-Modal Integration, Part 2

talk

Doug Greve

12:15 - 1:15

Lunch

--

--

1:15 - 1:45

optional - Motion-compensated neuroanatomical imaging

talk

Dylan Tisdall

1:45 - 2:00

Multi-Modal Integration Tutorial

tutorial

staff

2:00 - 2:30

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

2:30 - 3:15

Longitudinal Tutorial

tutorial

staff

3:15 - 3:45

optional technical talk - MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

3:45 - 4:10

optional technical talk - Registration Methods

talk

Lilla Zollei

4:10 - 4:45

break & Evaluation

4:45 - 5:15

Future Directions

talk

Anastasia Yendiki

5:15 - 5:30

Question and Answer Session (Answers to online questions here), FsQuiz

talk

staff

FsTutorial/Nov2013CourseSchedule (last edited 2017-09-26 11:35:14 by MorganFogarty)