FreeSurfer Course, November 4 - 6, 2013
MGH, Charlestown Navy Yard, Building 114, Room D1

8:30 - 10am Registration Desk is open

Monday, Nov 4th - Introduction / Single Subject / Registration / Troubleshooting

Time

Title

Type

Lecturer

9:00 - 9:30

optional - Unix Tutorial for FreeSurfer Users

tutorial

Allison Stevens

9:30 - 9:45

optional - Intro to FreeSurfer Jargon

talk

Allison Stevens

9:45 - 10:00

break

10:00 - 10:30

Introduction to Freesurfer

talk

Bruce Fischl

10:30 - 11:30

Analyzing the Individual Subject

talk

Doug Greve

11:30 - 11:50

break

11:50 - 12:30

optional - A Non-physicist's Intro to MR SpinBench

talk

Dylan Tisdall

12:30 - 1:30

Lunch (Suggestions for where to eat)

--

--

1:30 - 2:00

Freeview/Tksurfer demonstration

demo

Doug Greve

2:00 - 2:30

Interaction with Individual Subject Data Tutorial

tutorial

staff

2:30 - 3:00

FreeSurfer Troubleshooting

talk

Allison Stevens

3:00 - 3:20

break

3:20 - 4:20

Quality Checking a Recon

demo

Allison Stevens

4:20 - 5:20

Troubleshooting Tutorial

tutorial

staff

Tuesday, Nov 5th - ROIs / Longitudinal / Multimodal / Group Analysis

Time

Title

Type

Lecturer

9:00 - 9:40

Surface-based Analysis: Intersubject Smoothing & Registration

talk

Doug Greve

9:40 - 10:20

ROI Analysis

talk

Doug Greve

10:20 - 10:40

break

10:40 - 11:10

ROI Analysis Tutorial

tutorial

staff

10:30 - 11:30

Group Analysis / GLM / Multiple Comparisons

talk

Melanie Ganz

11:30 - 11:50

QDEC demonstration

demo

Nick Schmansky

11:50 - 12:50

Lunch

--

--

12:20 - 12:50

Optional Lunch Talk- MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

12:50 - 1:50

Group Analysis / Multiple Comparisons - mri_glmfit Tutorial

tutorial

staff

12:50 - 1:50

Group Analysis - qdec Tutorial

tutorial

staff

1:50 - 2:20

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

2:20 - 2:40

break

2:40 - 3:40

Longitudinal Tutorial

tutorial

staff

3:40 - 4:40

Multi-Modal Integration

talk

Doug Greve

4:40 - 5:00

Registration Methods

talk

Lilla Zollei

5:00 - 5:45

Multi-Modal Integration Tutorial

tutorial

staff

Boston Beer Works location information here and here.
Meet us at 6:10pm at the front of Building 149 (map to be provided soon).
If you miss us, we are taking the 6:15pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).
From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.

Wednesday, Nov 6th - fMRI / Diffusion / Q&A

Time

Title

Type

Lecturer

9:00 - 9:40

Introduction to Diffusion MRI

talk

Anastasia Yendiki

9:40 - 10:10

Diffusion Processing Tutorial

tutorial

staff

2:50 - 3:10

break

3:10 - 3:40

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

3:40 - 4:25

Tracula Tutorial

tutorial

staff

12:40 - 1:40

Lunch

--

--

1:10 - 1:40

Optional Lunch Talk- Motion-compensated neuroanatomical imaging

talk

Dylan Tisdall

2:50 - 3:10

break & Evaluation

4:25 - 5:00

Future Directions - Optical Coherence Tomography

talk

Caroline Magnain

5:00 - 5:30

Question and Answer Session (Answers to online questions here), FsQuiz

talk

staff