Welcome

Welcome to the FreeSurferWiki. The FreeSurferWiki is the central documentation source for FreeSurfer.
NEW USERS: Please see the FreeSurferBeginnersGuide to get started.
If you would like to contribute to the Wiki you will need a WikiUserName. Please see GettingAccess to obtain a WikiUserName.
See FreeSurferSupport for information on mailing lists relating to FreeSurfer. General questions about FreeSurfer should be directed to the MailTo(freesurfer AT nmr DOT mgh DOT harvard DOT edu, freesurfer mailing list). Bugs reports should be directed to the MailTo(analysis-bugs AT nmr DOT mgh DOT harvard DOT edu, analysis-bugs mailing list).

Software

[wiki:DownloadAndInstall FreeSurfer download and install] - Stable release v3.0.3 now available!
[wiki:MiscellaneousDownloads Miscellaneous downloads]
[wiki:InternalFreeSurferDistributions Information for internal (Martinos Center) users]
[wiki:FtpFileExchange Information on FTP file exchange]
[wiki:RemoteAccess Information on remote access]

FreeSurferAnalysisPipelineOverview - Overview of the FreeSurfer analysis pipeline.
WorkFlows - Information on the how the FreeSurfer tools are used in a processing stream.
ArticlesSlidesAndPosters - Background describing the techniques used in the FreeSurfer tools, and their usage in research.
["Tutorials"] - A walk-through of a FreeSurfer work-flow, covering editing and troubleshooting techniques in-depth, as well as a group study example.
["ToolsAndCommands"] - GUI and command-line tool documentation.
FileFormats - Description of native FreeSurfer file formats, as well as external file formats used by FreeSurfer.
CoordinateSystems - Details on the voxel and RAS coordinate systems used in FreeSurfer.
DevelopersGuide - Information for developers of the FreeSurfer code-base (Martinos Center internal).
ReconAllDevTable - An at-a-glance table showing the FreeSurfer files used & created during the recommended processing stream.

FreeSurferSupport - Mailing lists and helplines which provide user support for FreeSurfer