FreeSurfer Course, April 2-4, 2012

MGH, Charlestown Navy Yard, Building 114, Room D1

Fill out the Course evaluation here!!!

Monday, April 2nd - Introduction / Single Subject / Registration / Troubleshooting

Time

Title

Type

Lecturer

Give us your feedback

8:00 - 8:30

optional - Unix Tutorial for FreeSurfer Users online practice

tutorial

Allison Stevens

8:30 - 9:00

optional - Intro to FreeSurfer Jargon

talk

Allison Stevens

8:30 - 9:00

Course Registration

sign-in

staff

9:00 - 9:30

Introduction to Freesurfer

talk

Bruce Fischl

9:30 - 10:30

Analyzing the Individual Subject

talk

Bruce Fischl

10:30 - 10:50

break

10:50 - 11:20

Tkmedit/Tksurfer demonstration

demo

Doug Greve

11:20 - 11:50

Interaction with Individual Subject Data Tutorial

tutorial

staff

11:50 - 12:30

Surface-based Analysis: Intersubject Smoothing & Registration

talk

Doug Greve

12:30 - 1:30

Lunch (Suggestions for where to eat)

--

--

1:00 - 1:30

Optional Lunch Talk- A Non-physicist's Intro to MR SpinBench

talk

Dylan Tisdall

1:30 - 2:10

Failure Modes

talk

Bruce Fischl

2:10 - 2:30

Troubleshooting Demonstration

demo

Allison

2:30 - 2:50

break

2:50 - 3:50

Troubleshooting Tutorial

tutorial

staff

3:50 - 4:50

Quality Checking a Recon

demo

Allison Stevens

5:00 -

optional - FreeSurfer Installation on Personal Laptops

one-on-one

staff

5:00 -

optional - Start Processing Your Own Data

one-on-one

staff

Tuesday, April 3rd - ROIs / Longitudinal / Multimodal / Group Analysis

Time

Title

Type

Lecturer

Give us your feedback

9:00 - 9:40

ROI Analysis

talk

Doug Greve

9:40 - 10:10

ROI Analysis Tutorial

tutorial

staff

10:10 - 10:30

break

10:30 - 11:30

Group Analysis / GLM / Multiple Comparisons

talk

J. Eugenio Iglesias

11:30 - 11:50

QDEC demonstration

demo

Nick Schmansky

11:50 - 12:50

Lunch

--

--

12:20 - 12:50

Optional Lunch Talk- MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

12:50 - 1:50

Group Analysis / Multiple Comparisons - mri_glmfit Tutorial

tutorial

staff

12:50 - 1:50

Group Analysis - qdec Tutorial

tutorial

staff

1:50 - 2:20

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

2:20 - 2:40

break

2:40 - 3:40

Freeview Demo, Longitudinal Tutorial

tutorial

staff

3:40 - 4:40

Multi-Modal Integration

talk

Doug Greve

4:40 - 5:00

Registration Methods

talk

Lilla Zollei

5:00 - 5:45

Multi-Modal Integration Tutorial

tutorial

staff

Boston Beer Works location information here and here.
Meet us at 6:10pm at the front of Building 149 (map to be provided soon).
If you miss us, we are taking the 6:15pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).
From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.

Wednesday, April 4th - fMRI / Diffusion / Q&A

**For those not interested in fMRI and/or Diffusion processing, there may be the option of meeting with a FreeSurfer staff member during the talks below.
These one-on-one sessions can be used to get feedback on your data and/or your analysis. Sign-up for these sessions will occur a week or so before the course date.

Time

Title

Type

Lecturer

Give us your feedback

9:00 - 10:00

Basics of fMRI Analysis

talk

Jon Polimeni

10:00 - 10:40

FSFAST

talk

Doug Greve

10:40 - 11:00

break

11:00 - 11:40

FSFAST continued

talk

Doug Greve

11:40 - 12:40

FSFAST Tutorial

tutorial

staff

12:40 - 1:40

Lunch

--

--

1:10 - 1:40

Optional Lunch Talk- Motion-compensated neuroanatomical imaging

talk

Dylan Tisdall

1:40 - 2:20

Introduction to Diffusion MRI

talk

Anastasia Yendiki

2:20 - 2:50

Diffusion Processing Tutorial

tutorial

staff

2:50 - 3:10

break & Evaluation

3:10 - 3:40

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

3:40 - 4:25

Tracula Tutorial

tutorial

staff

4:25 - 5:00

Future Directions

talk

Bruce Fischl

5:00 - 5:30

Question and Answer Session, FsQuiz

talk

staff

FsTutorial/April2012CourseSchedule (last edited 2012-04-04 14:22:41 by AllisonStevens)