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| ||11:50 - 12:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] ||talk ||Doug Greve || || | ||11:50 - 12:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration|&do=get]] ||talk ||Doug Greve || || |
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| ||2:15- 2:55 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] ||talk ||Bruce Fischl || || | ||2:15 - 2:55 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] ||talk ||Bruce Fischl || || |
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||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve || || ||10:00 - 10:30 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff || || ||10:30 - 10:50 ||'''break''' || || || ||10:50 - 11:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.pdf|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter || || ||11:20 - 12:10 ||Freeview Demo, [[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff || || ||12:10 - 1:10 ||'''Lunch''' ||-- ||-- || ||''12:40 - 1:10'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' ||''talk'' ||''Andre van der Kouwe'' || || ||1:10 - 1:40 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] ||talk ||Bruce Fischl || || ||1:40 - 2:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve || || ||2:40 - 3:00 ||'''break''' || || || ||3:00 - 3:45 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff || || ||3:45 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || J. Eugenio Iglesias || || ||4:45 - 5:15 ||QDEC demonstration ||demo ||Nick Schmansky || || ||5:15 - 6:15 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff || || ||5:15 - 6:15 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff || || |
||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve || || ||9:40 - 10:10 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff || || ||10:10 - 10:30 ||'''break''' || || || ||10:30 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.pdf|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter || || ||11:00 - 12:00 ||Freeview Demo, [[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff || || ||12:00 - 1:00 ||'''Lunch''' ||-- ||-- || ||''12:30 - 1:00'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' ||''talk'' ||''Andre van der Kouwe'' || || ||1:00 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve || || ||2:00 - 2:45 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff || || ||2:45 - 3:05 ||'''break''' || || || ||3:05 - 4:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || J. Eugenio Iglesias || || ||4:05 - 4:25 ||QDEC demonstration ||demo ||Nick Schmansky || || ||4:25 - 5:25 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff || || ||4:25 - 5:25 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff || || |
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Meet us at 6:40pm at the front of Building 149 (map to be provided soon). <<BR>> If you miss us, we are taking the 6:45pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 7pm, 7:15pm, and 7:45pm). |
Meet us at 6:10pm at the front of Building 149 (map to be provided soon). <<BR>> If you miss us, we are taking the 6:15pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm). |
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||10:00 - 10:20 ||'''break''' || || || ||10:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve || || |
||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve || || ||10:40 - 11:00 ||'''break''' || || || ||11:00 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] continued ||talk ||Doug Greve || || |
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||1:40 - 2:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki || || ||2:40 - 3:25 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff || || ||3:25 - 3:45 ||'''break''' & Evaluation || || || ||3:45 - 4:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki || || ||4:15 - 5:00 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || || |
||1:40 - 2:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki || || ||2:20 - 2:50 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff || || ||2:50 - 3:10 ||'''break''' & Evaluation || || || ||3:10 - 3:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki || || ||3:40 - 4:25 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || || ||4:25 - 5:00 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] ||talk ||Bruce Fischl || || |
FreeSurfer Course, April 2-4, 2012
MGH, Charlestown Navy Yard, Building 114, Room D1
Monday, April 2nd - Introduction / Single Subject / Registration / Troubleshooting
Time |
Title |
Type |
Lecturer |
Give us your feedback |
8:00 - 8:30 |
optional - Unix Tutorial for FreeSurfer Users online practice |
tutorial |
Allison Stevens |
|
8:30 - 9:00 |
optional - Intro to FreeSurfer Jargon |
talk |
Allison Stevens |
|
8:30 - 9:00 |
Course Registration |
sign-in |
|
|
9:00 - 9:30 |
talk |
Bruce Fischl |
|
|
9:30 - 10:30 |
talk |
Doug Greve |
|
|
10:30 - 10:50 |
break |
|
|
|
10:50 - 11:20 |
Tkmedit/Tksurfer demonstration |
demo |
Doug Greve |
|
11:20 - 11:50 |
tutorial |
staff |
|
|
11:50 - 12:30 |
Surface-based Analysis: Intersubject Smoothing & Registration |
talk |
Doug Greve |
|
12:30 - 1:30 |
-- |
-- |
||
1:00 - 1:30 |
Optional Lunch Talk- A Non-physicist's Intro to MR SpinBench |
talk |
Dylan Tisdall |
|
1:30 - 2:15 |
talk |
Lilla Zollei |
|
|
2:15 - 2:55 |
talk |
Bruce Fischl |
|
|
2:55 - 3:15 |
break |
|
|
|
3:15 - 3:35 |
Troubleshooting Demonstration |
demo |
Allison |
|
3:35 - 4:35 |
tutorial |
staff |
|
|
4:35 - 5:30 |
Quality Checking a Recon |
demo |
Allison Stevens |
|
5:30 - |
optional - FreeSurfer Installation on Personal Laptops |
one-on-one |
staff |
|
5:30 - |
optional - Start Processing Your Own Data |
one-on-one |
staff |
|
Tuesday, April 3rd - ROIs / Longitudinal / Multimodal / Group Analysis
Time |
Title |
Type |
Lecturer |
Give us your feedback |
9:00 - 9:40 |
talk |
Doug Greve |
|
|
9:40 - 10:10 |
tutorial |
staff |
|
|
10:10 - 10:30 |
break |
|
|
|
10:30 - 11:00 |
talk |
Martin Reuter |
|
|
11:00 - 12:00 |
Freeview Demo, Longitudinal Tutorial |
tutorial |
staff |
|
12:00 - 1:00 |
Lunch |
-- |
-- |
|
12:30 - 1:00 |
Optional Lunch Talk- MRI Acquisition Methods for Morphometry |
talk |
Andre van der Kouwe |
|
1:00 - 2:00 |
talk |
Doug Greve |
|
|
2:00 - 2:45 |
tutorial |
staff |
|
|
2:45 - 3:05 |
break |
|
|
|
3:05 - 4:05 |
talk |
J. Eugenio Iglesias |
|
|
4:05 - 4:25 |
QDEC demonstration |
demo |
Nick Schmansky |
|
4:25 - 5:25 |
tutorial |
staff |
|
|
4:25 - 5:25 |
tutorial |
staff |
|
Boston Beer Works location information here and here.
Meet us at 6:10pm at the front of Building 149 (map to be provided soon).
If you miss us, we are taking the 6:15pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).
From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.
Wednesday, April 4th - fMRI / Diffusion / Q&A
**For those not interested in fMRI and/or Diffusion processing, there may be the option of meeting with a FreeSurfer staff member during the talks below. Time Title Type Lecturer Give us your feedback 9:00 - 10:00 talk Jon Polimeni 10:00 - 10:40 talk Doug Greve 10:40 - 11:00 break 11:00 - 11:40 FSFAST continued talk Doug Greve 11:40 - 12:40 tutorial staff 12:40 - 1:40 Lunch -- -- 1:10 - 1:40 Optional Lunch Talk- Motion-compensated neuroanatomical imaging talk Dylan Tisdall 1:40 - 2:20 talk Anastasia Yendiki 2:20 - 2:50 tutorial staff 2:50 - 3:10 break & Evaluation 3:10 - 3:40 talk Anastasia Yendiki 3:40 - 4:25 tutorial staff 4:25 - 5:00 Future Directions: Inferring architectonic boundaries from in-vivo MRI talk Bruce Fischl 5:00 - 5:30 Question and Answer Session, FsQuiz talk staff
These one-on-one sessions can be used to get feedback on your data and/or your analysis. Sign-up for these sessions will occur a week or so before the course date.