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||1:15 - 1:45 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] || ||1:45 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Registration & Smoothing]] ||talk ||Lilla Zöllei || ||2:15 - 2:35 ||'''break''' || || || ||2:35 - 3:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.pptx|ROI Analysis]] ||talk ||Doug Greve || ||3:05 - 3:55 ||[[FsTutorial/AnatomicalROIV6.0|ROI Analysis Tutorial]] ||tutorial ||staff || ||3:55 - 4:25 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Sep_2015_MRI_Basics.pdf|A Non-physicist's Intro to MR]] ([[http://www.heartvista.com/SpinBench|SpinBench]])'' '' ||talk ||Robert Frost || ||4:25 - 4:55 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods]] ||talk ||André van der Kouwe || ||4:55 - 5:15 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated Neuroanatomical Imaging]] ||talk ||?? || |
||1:15 - 1:30 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] || ||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Registration & Smoothing]] ||talk ||Lilla Zöllei || ||2:00 - 2:20 ||'''break''' || || || ||2:20 - 3:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.pptx|ROI Analysis]] ||talk ||Doug Greve || ||3:20 - 4:00 ||[[FsTutorial/AnatomicalROIV6.0|ROI Analysis Tutorial]] ||tutorial ||staff || ||4:00 - 4:30 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Sep_2015_MRI_Basics.pdf|A Non-physicist's Intro to MR]] ([[http://www.heartvista.com/SpinBench|SpinBench]])'' '' ||talk ||Robert Frost || ||4:30 - 5:00 ||* Running !FreeSurfer in the cloud with AWS batch ||talk ||Paul Wighton || |
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||2:15 - 2:55 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff || ||2:55 - 3:25 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||Bruce Fischl || ||3:25 - 3:45 ||'''break''' || || ||3:45 - 4:45 ||[[FsTutorial/TroubleshootingDataV6.0|Troubleshooting Tutorial]] ||tutorial ||staff || ||4:45 - 5:45 ||Quality Checking a Recon ||demo ||Allison Stevens || |
||2:15 - 2:45 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff || ||2:45 - 3:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||Bruce Fischl || ||3:15 - 3:35 ||'''break''' || || ||3:35 - 4:35 ||[[FsTutorial/TroubleshootingDataV6.0|Troubleshooting Tutorial]] ||tutorial ||staff || ||4:35 - 5:35 ||Quality Checking a Recon ||demo ||Allison Stevens || |
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||10:00 - 10:15 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Sep_2015_Diffusion.pdf|A Non-Physicist's Intro to Diffusion MRI Physics]] '' '' ||talk ||?? || | ||10:00 - 10:15 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Sep_2015_Diffusion.pdf|A Non-Physicist's Intro to Diffusion MRI Physics]] '' '' ||talk ||Dylan Tisdall || |
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||1:00 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki || ||2:00 - 3:00 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || ||3:00 - 3:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|Longitudinal TRACULA]] ||talk ||Anastasia Yendiki || ||3:10 - 3:30 ||'''break''' || || ||3:30 - 4:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fMRI_intro.ppt|Basics of fMRI Analysis]] ||talk ||Jon Polimeni || ||4:30 - 5:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST, Part 1: Preprocessing]] ||talk ||Doug Greve || |
||1:00 - 1:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki || ||1:50 - 2:50 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || ||2:50 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|Longitudinal TRACULA]] ||talk ||Anastasia Yendiki || ||3:00 - 3:20 ||'''break''' || || ||3:20 - 4:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fMRI_intro.ppt|Basics of fMRI Analysis]] ||talk ||Jon Polimeni || ||4:20 - 4:50 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods]] ||talk ||André van der Kouwe || |
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||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST, Part 2: GLM Analysis]] ||talk ||Doug Greve || ||9:40 - 10:40 ||[[FsFastTutorialV6.0|FSFAST Tutorial]] ||tutorial ||staff || ||10:40 - 11:00 ||'''break''' & Evaluation || || ||11:00 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part2.pptx|Multi-Modal Integration, Part 2]] ||talk ||Doug Greve || ||11:30 - 12:00 ||[[MultiModalTutorialV6.0|Multi-Modal Integration Tutorial: fMRI Integration & Surface-based Group fMRI Analysis]] ||tutorial ||staff || |
||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST, Part 1: Preprocessing]] ||talk ||Doug Greve || ||10:00 - 10:30 ||[[FsFastTutorialV6.0|FSFAST Tutorial, Part 1]] ||tutorial ||staff || ||10:30 - 10:50 ||'''break''' & Evaluation || || ||10:50 - 11:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST, Part 2: GLM Analysis]] ||talk ||Doug Greve || ||11:20 - 12:00 ||[[FsFastTutorialV6.0|FSFAST Tutorial]] ||tutorial ||staff || |
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||1:00 - 1:40 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|An Overview of Registration Methods]] ||talk ||Lilla Zöllei || ||1:40 - 2:25 ||Future Directions ||talk ||??? || ||2:25 - 2:45 ||Question & Answer Session ||-- ||staff || |
||1:00 - 1:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part2.pptx|Multi-Modal Integration, Part 2]] ||talk ||Doug Greve || ||1:30 - 2:00 ||[[MultiModalTutorialV6.0|Multi-Modal Integration Tutorial: fMRI Integration & Surface-based Group fMRI Analysis]] ||tutorial ||staff || ||2:00 - 2:30 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|An Overview of Registration Methods]] ||talk ||Lilla Zöllei || ||2:30 - 3:00 ||Future Directions ||talk ||??? || ##||2:25 - 2:45 ||Question & Answer Session ||-- ||staff || |
FreeSurfer Course, April 3-6
Our awesome FreeSurfer shirts can be purchased here.
8:00 - 9:30am Registration Desk Open
* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk that covers basic/beginner material.
Monday, April 3rd - Introduction / Single Subject Analysis / ROI Analysis / MR Acquisition
Time |
Title |
Type |
Lecturer |
8:30 - 9:00 |
talk/demo |
Zeke Kaufman |
|
9:00 - 9:15 |
talk |
Allison Stevens & Lilla Zöllei |
|
9:15 - 9:30 |
break |
|
|
9:30 - 10:00 |
talk |
Bruce Fischl |
|
10:00 - 11:10 |
talk |
Doug Greve |
|
11:10 - 11:30 |
break |
|
|
11:30 - 11:45 |
Freeview demonstration |
Andrew Hoopes |
|
11:45 - 12:15 |
tutorial |
||
12:15 - 1:15 |
-- |
-- |
|
1:15 - 1:30 |
tutorial |
||
1:30 - 2:00 |
Surface-based Analysis: Intersubject Registration & Smoothing |
talk |
Lilla Zöllei |
2:00 - 2:20 |
break |
|
|
2:20 - 3:20 |
talk |
Doug Greve |
|
3:20 - 4:00 |
tutorial |
staff |
|
4:00 - 4:30 |
talk |
Robert Frost |
|
4:30 - 5:00 |
* Running FreeSurfer in the cloud with AWS batch |
talk |
Paul Wighton |
Answers to online questions here
Tuesday, April 4th - Group Analysis / Longitudinal Analysis / Troubleshooting
Time |
Title |
Type |
Lecturer |
9:00 - 9:50 |
talk |
Emily Lindemer |
|
9:50 - 10:30 |
tutorial |
staff |
|
10:30 - 10:50 |
break |
|
|
10:50 - 11:10 |
talk |
Doug Greve |
|
11:10 - 11:30 |
tutorial |
staff |
|
11:30 - 11:50 |
QDEC demonstration |
demo |
Doug Greve |
11:50 - 12:50 |
Lunch |
-- |
-- |
12:50 - 1:30 |
tutorial |
staff |
|
1:30 - 2:15 |
talk |
Lilla Zöllei |
|
2:15 - 2:45 |
tutorial |
staff |
|
2:45 - 3:15 |
talk |
Bruce Fischl |
|
3:15 - 3:35 |
break |
|
|
3:35 - 4:35 |
tutorial |
staff |
|
4:35 - 5:35 |
Quality Checking a Recon |
demo |
Allison Stevens |
6:30 - ? |
Boston Beer Works |
social activity |
staff |
Answers to online questions here
Boston Beer Works location information here and here.
Meet us in front of Building 149 to catch the 6:30pm shuttle bus (it leaves on time!).
If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street.
Boston Beer Works will be down that street, on your right. (Shuttles depart every 15 minutes up until 7:15pm and every half hour after that).
Wednesday, April 5th - Multimodal Analysis / Diffusion Analysis / fMRI Analysis
Time |
Title |
Type |
Lecturer |
9:00 - 9:30 |
talk |
Lilla Zöllei |
|
9:30 - 10:00 |
tutorial |
staff |
|
10:00 - 10:15 |
talk |
Dylan Tisdall |
|
10:15 - 10:35 |
break |
|
|
10:35 - 11:15 |
talk |
Anastasia Yendiki |
|
11:15 - 12:00 |
tutorial |
staff |
|
12:00 - 1:00 |
Lunch |
-- |
-- |
1:00 - 1:50 |
talk |
Anastasia Yendiki |
|
1:50 - 2:50 |
tutorial |
staff |
|
2:50 - 3:00 |
talk |
Anastasia Yendiki |
|
3:00 - 3:20 |
break |
|
|
3:20 - 4:20 |
talk |
Jon Polimeni |
|
4:20 - 4:50 |
talk |
André van der Kouwe |
Answers to online questions here
Thursday, April 6th - fMRI Analysis / Multimodal Analysis / Future Directions
Time |
Title |
Type |
Lecturer |
9:00 - 10:00 |
talk |
Doug Greve |
|
10:00 - 10:30 |
tutorial |
staff |
|
10:30 - 10:50 |
break & Evaluation |
|
|
10:50 - 11:20 |
talk |
Doug Greve |
|
11:20 - 12:00 |
tutorial |
staff |
|
12:00 - 1:00 |
Lunch |
-- |
-- |
1:00 - 1:30 |
talk |
Doug Greve |
|
1:30 - 2:00 |
Multi-Modal Integration Tutorial: fMRI Integration & Surface-based Group fMRI Analysis |
tutorial |
staff |
2:00 - 2:30 |
talk |
Lilla Zöllei |
|
2:30 - 3:00 |
Future Directions |
talk |
??? |
Answers to online questions here
* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk covering basic/beginner material.