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| Barcelona Course September 2017 |
'''!FreeSurfer Course in Barcelona, Spain, September 5-8 2017''' === 8:00 - 9:30am Registration Desk Open === * Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the !FreeSurfer processing stream. <<BR>> ** Indicates an optional talk that covers basic/beginner material. ==== Monday, April 3rd - Introduction / Single Subject Analysis / ROI Analysis ==== ||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || ||8:30 - 9:00 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/Unix_tutorial_zjk.pdf|Intro to Linux for FreeSurfer Users]] ||talk/demo ||Zeke Kaufman || ||9:00 - 9:15 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk ||Emma Boyd & Lilla Zöllei || ||9:15 - 9:30 ||'''break''' || || || ||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl || ||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve || ||11:10 - 11:30 ||'''break''' || || || ||11:30 - 11:45 ||Freeview demonstration ||[[FsTutorial/FreeviewDemo|demo]] ||Andrew Hoopes|| ||11:45 - 12:15 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] || ||12:15 - 1:15 ||'''Lunch''' [[https://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription?action=AttachFile&do=get&target=CourseMap.jpg|(Suggestions for where to eat)]] ||-- ||-- || ||1:15 - 1:30 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] || ||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Registration & Smoothing]] ||talk ||Lilla Zöllei || ||2:00 - 2:20 ||'''break''' || || || ||2:20 - 3:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.pptx|ROI Analysis]] ||talk ||Doug Greve || ||3:20 - 4:00 ||[[FsTutorial/AnatomicalROIV6.0|ROI Analysis Tutorial]] ||tutorial ||staff || ||4:00 - 4:30 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/IntroMRI.pptx|A Non-physicist's Intro to MR]] ([[http://www.heartvista.com/SpinBench|SpinBench]])'' '' ||talk ||Robert Frost || ||4:30 - 5:00 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs-cloud-presentation.ppt|Running FreeSurfer in the cloud with AWS batch]] ||talk ||Paul Wighton || Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]] ==== Tuesday, April 4th - Group Analysis / Longitudinal Analysis / Troubleshooting ==== ||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || ||9:00 - 9:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Copenhagen_Group_Analysis.pptx|Group Analysis]] ||talk ||Emily Lindemer || ||9:50 - 10:30 ||[[FsTutorial/GroupAnalysisV6.0|Group Analysis Tutorial]] ||tutorial ||staff || ||10:30 - 10:50 ||'''break''' || || || ||10:50 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dng.Copenhagen_multiplecomparisons.ppt|Multiple Comparisons]] ||talk ||Doug Greve || ||11:10 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysisV6.0#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff || ||11:30 - 11:50 ||QDEC demonstration ||demo ||Doug Greve || ||11:50 - 12:50 ||'''Lunch''' ||-- ||-- || ||12:50 - 1:30 ||[[FsTutorial/QdecGroupAnalysisV6.0|QDEC Tutorial]] ||tutorial ||staff || ||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.troubleshooting.ppt|FreeSurfer Troubleshooting]] ||talk ||Bruce Fischl || ||2:00 - 3:00 ||[[FsTutorial/TroubleshootingDataV6.0|Troubleshooting Tutorial]] ||tutorial ||staff || ||3:00 - 3:20 ||'''break''' || || || ||3:20 - 4:20 ||Quality Checking a Recon ||demo ||Allison Stevens || ||4:20 - 5:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.longitudinal.pptx|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Lilla Zöllei || ||5:05 - 5:35 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff || ||6:30 - ? ||Boston Beer Works ||social activity ||you! || Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]] '''Boston Beer Works location information [[http://www.beerworks.net/html/locations_canal.html|here]] and [[http://maps.google.com/maps?f=q&source=s_q&hl=en&geocode=&q=112+Canal+Street+Boston,+MA+02114&aq=&sll=37.0625,-95.677068&sspn=44.25371,54.228516&ie=UTF8&hq=&hnear=112+Canal+St,+Boston,+Massachusetts+02114&ll=42.367359,-71.058776&spn=0.010131,0.013239&z=16|here]].'''<<BR>> Meet us in front of [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Map|Building 149]] to catch the 6:30pm shuttle bus (it leaves on time!). <<BR>> If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. <<BR>>Boston Beer Works will be down that street, on your right. (Shuttles depart every 15 minutes up until 7:15pm and every half hour after that). ==== Wednesday, April 5th - Multimodal Analysis / Diffusion Analysis / fMRI Analysis / MR Acquisition ==== ||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || ||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part1.pptx|Multi-Modal Integration, Part 1: Registration]] ||talk ||Lilla Zöllei || ||9:30 - 10:00 ||[[MultiModalTutorialV6.0|Multi-Modal Integration Tutorial, Part 1]] ||tutorial ||staff || ||10:00 - 10:15 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/IntroDiffusion.pptx|A Non-Physicist's Intro to Diffusion MRI Physics]] '' '' ||talk ||Robert Frost || ||10:15 - 10:35 ||'''break''' || || || ||10:35 - 11:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Anastasia Yendiki || ||11:15 - 12:00 ||[[FsTutorial/DiffusionV6.0|Diffusion Processing Tutorial]] ||tutorial ||staff || ||12:00 - 1:00 ||'''Lunch''' ||-- ||-- || ||1:00 - 1:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki || ||1:50 - 2:50 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || ||2:50 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|Longitudinal TRACULA]] ||talk ||Anastasia Yendiki || ||3:00 - 3:20 ||'''break''' || || || ||3:20 - 4:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fMRI_intro.ppt|Basics of fMRI Analysis]] ||talk ||Jon Polimeni || ||4:20 - 4:50 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods]] ||talk ||André van der Kouwe || Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]] ##'''The !FreeSurfer Evaluation is [[ https://docs.google.com/spreadsheet/viewform?formkey=dGZKM24xb1NpRDRJOHhwdmxCUm9CbFE6MA|here]]!''' ==== Thursday, April 6th - fMRI Analysis / Multimodal Analysis / Future Directions ==== ||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || ||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST, Part 1: Preprocessing]] ||talk ||Doug Greve || ||9:30 - 10:00 ||[[FsFastTutorialV6.0|FSFAST Tutorial, Part 1]] ||tutorial ||staff || ||10:00 - 10:20 ||'''break''' & [[https://docs.google.com/forms/d/e/1FAIpQLSfI5II6j8DdhFS2b69F8NF4vCHNku3rZuFxvi00UUu6bIdtJw/viewform?usp=send_form|Evaluation]] || || || ||10:20 - 11:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST, Part 2: GLM Analysis]] ||talk ||Doug Greve || ||11:20 - 12:00 ||[[FsFastTutorialV6.0|FSFAST Tutorial, Part 2]] ||tutorial ||staff || ||12:00 - 1:00 ||'''Lunch''' ||-- ||-- || ||1:00 - 1:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.Part2.pptx|Multi-Modal Integration, Part 2: Group Analysis]] ||talk ||Doug Greve || ||1:30 - 2:00 ||[[MultiModalTutorialV6.0|Multi-Modal Integration Tutorial, Part 2]] ||tutorial ||staff || ||2:00 - 2:30 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|An Overview of Registration Methods]] ||talk ||Lilla Zöllei || ||2:30 - 3:00 ||Future Directions ||talk ||Bruce Fischl || ##||2:25 - 2:45 ||Question & Answer Session ||-- ||staff || Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]] * Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the !FreeSurfer processing stream. <<BR>> ** Indicates an optional talk covering basic/beginner material. |
FreeSurfer Course in Barcelona, Spain, September 5-8 2017
8:00 - 9:30am Registration Desk Open
* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk that covers basic/beginner material.
Monday, April 3rd - Introduction / Single Subject Analysis / ROI Analysis
Time |
Title |
Type |
Lecturer |
8:30 - 9:00 |
talk/demo |
Zeke Kaufman |
|
9:00 - 9:15 |
talk |
Emma Boyd & Lilla Zöllei |
|
9:15 - 9:30 |
break |
|
|
9:30 - 10:00 |
talk |
Bruce Fischl |
|
10:00 - 11:10 |
talk |
Doug Greve |
|
11:10 - 11:30 |
break |
|
|
11:30 - 11:45 |
Freeview demonstration |
Andrew Hoopes |
|
11:45 - 12:15 |
tutorial |
||
12:15 - 1:15 |
-- |
-- |
|
1:15 - 1:30 |
tutorial |
||
1:30 - 2:00 |
Surface-based Analysis: Intersubject Registration & Smoothing |
talk |
Lilla Zöllei |
2:00 - 2:20 |
break |
|
|
2:20 - 3:20 |
talk |
Doug Greve |
|
3:20 - 4:00 |
tutorial |
staff |
|
4:00 - 4:30 |
talk |
Robert Frost |
|
4:30 - 5:00 |
talk |
Paul Wighton |
Answers to online questions here
Tuesday, April 4th - Group Analysis / Longitudinal Analysis / Troubleshooting
Time |
Title |
Type |
Lecturer |
9:00 - 9:50 |
talk |
Emily Lindemer |
|
9:50 - 10:30 |
tutorial |
staff |
|
10:30 - 10:50 |
break |
|
|
10:50 - 11:10 |
talk |
Doug Greve |
|
11:10 - 11:30 |
tutorial |
staff |
|
11:30 - 11:50 |
QDEC demonstration |
demo |
Doug Greve |
11:50 - 12:50 |
Lunch |
-- |
-- |
12:50 - 1:30 |
tutorial |
staff |
|
1:30 - 2:00 |
talk |
Bruce Fischl |
|
2:00 - 3:00 |
tutorial |
staff |
|
3:00 - 3:20 |
break |
|
|
3:20 - 4:20 |
Quality Checking a Recon |
demo |
Allison Stevens |
4:20 - 5:05 |
talk |
Lilla Zöllei |
|
5:05 - 5:35 |
tutorial |
staff |
|
6:30 - ? |
Boston Beer Works |
social activity |
you! |
Answers to online questions here
Boston Beer Works location information here and here.
Meet us in front of Building 149 to catch the 6:30pm shuttle bus (it leaves on time!).
If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street.
Boston Beer Works will be down that street, on your right. (Shuttles depart every 15 minutes up until 7:15pm and every half hour after that).
Wednesday, April 5th - Multimodal Analysis / Diffusion Analysis / fMRI Analysis / MR Acquisition
Time |
Title |
Type |
Lecturer |
9:00 - 9:30 |
talk |
Lilla Zöllei |
|
9:30 - 10:00 |
tutorial |
staff |
|
10:00 - 10:15 |
talk |
Robert Frost |
|
10:15 - 10:35 |
break |
|
|
10:35 - 11:15 |
talk |
Anastasia Yendiki |
|
11:15 - 12:00 |
tutorial |
staff |
|
12:00 - 1:00 |
Lunch |
-- |
-- |
1:00 - 1:50 |
talk |
Anastasia Yendiki |
|
1:50 - 2:50 |
tutorial |
staff |
|
2:50 - 3:00 |
talk |
Anastasia Yendiki |
|
3:00 - 3:20 |
break |
|
|
3:20 - 4:20 |
talk |
Jon Polimeni |
|
4:20 - 4:50 |
talk |
André van der Kouwe |
Answers to online questions here
Thursday, April 6th - fMRI Analysis / Multimodal Analysis / Future Directions
Time |
Title |
Type |
Lecturer |
9:00 - 9:30 |
talk |
Doug Greve |
|
9:30 - 10:00 |
tutorial |
staff |
|
10:00 - 10:20 |
break & Evaluation |
|
|
10:20 - 11:20 |
talk |
Doug Greve |
|
11:20 - 12:00 |
tutorial |
staff |
|
12:00 - 1:00 |
Lunch |
-- |
-- |
1:00 - 1:30 |
talk |
Doug Greve |
|
1:30 - 2:00 |
tutorial |
staff |
|
2:00 - 2:30 |
talk |
Lilla Zöllei |
|
2:30 - 3:00 |
Future Directions |
talk |
Bruce Fischl |
Answers to online questions here
* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk covering basic/beginner material.