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'''Click on any of the topics below for more information: <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Payment|Payment]] <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#FAQ|FAQ]] <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Lecturers|Lecturers]] <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Accommodations|Accommodations]]  <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Map|Map of the Course Location]]''' '''Click on any of the topics below for more information: <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Schedule|Course Schedule]] <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Payment|Payment]] <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#FAQ|FAQ]] <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Lecturers|Lecturers]] <<BR>> [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Accommodations|Accommodations]]'''
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||8:30 - 9:00 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/Unix_tutorial_zjk.pdf|Intro to Linux for FreeSurfer Users]] ||talk/demo ||Zeke Kaufman ||
||9:00 - 9:15 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk ||Emma Boyd & Lilla Zöllei ||
||9:15 - 9:30 ||'''break''' || || ||
||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl ||
||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve ||
||11:10 - 11:30 ||'''break''' || || ||
||11:30 - 11:45 ||Freeview demonstration ||[[FsTutorial/FreeviewDemo|demo]] ||Andrew Hoopes||
||11:45 - 12:15 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||
||12:15 - 1:15 ||'''Lunch''' [[https://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription?action=AttachFile&do=get&target=CourseMap.jpg|(Suggestions for where to eat)]] ||-- ||-- ||
||1:15 - 1:30 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||
||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Registration & Smoothing]] ||talk ||Lilla Zöllei ||
||2:00 - 2:20 ||'''break''' || || ||
||2:20 - 3:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.pptx|ROI Analysis]] ||talk ||Doug Greve ||
||3:20 - 4:00 ||[[FsTutorial/AnatomicalROIV6.0|ROI Analysis Tutorial]] ||tutorial ||staff ||
||4:00 - 4:30 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/IntroMRI.pptx|A Non-physicist's Intro to MR]] ([[http://www.heartvista.com/SpinBench|SpinBench]])'' '' ||talk ||Robert Frost ||
||4:30 - 5:00 ||* [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs-cloud-presentation.ppt|Running FreeSurfer in the cloud with AWS batch]] ||talk ||Paul Wighton ||
||9:00 - 9:30 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/Unix_tutorial_zjk.pdf|Intro to Linux for FreeSurfer Users]] ||talk/demo ||Emma Boyd ||
||9:30 - 9:45 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk ||Emma Boyd ||
||9:45 - 10:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Anastasia Yendiki ||
||10:15 - 11:25 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Emma Boyd ||
||11:25 - 11:45 ||'''break''' || || ||
||11:45 - 12:00 ||Freeview demonstration ||[[FsTutorial/FreeviewDemo|demo]] || Emma Boyd ||
||12:00 - 12:30 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||talk ||Emma Boyd ||
||12:30 - 12:45 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||
||12:45 - 13:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Registration & Smoothing]] ||talk ||TBD ||
||13:15 - 14:45 ||'''Lunch''' ||-- ||-- ||
||14:45 - 15:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.pptx|ROI Analysis]] ||talk ||TBD ||
||15:45 - 16:25 ||[[FsTutorial/AnatomicalROIV6.0|ROI Analysis Tutorial]] ||tutorial ||staff ||
||16:25 - 16:55 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/IntroMRI.pptx|A Non-physicist's Intro to MR]] ([[http://www.heartvista.com/SpinBench|SpinBench]])'' '' ||talk ||Emma Boyd ||

Details for the FreeSurfer Course in Barcelona, Spain, September 5-8 2017

Barcelona Course Details

Click on any of the topics below for more information:
Course Schedule
Payment
FAQ
Lecturers
Accommodations

Course Schedule

* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk that covers basic/beginner material.

Tuesday, September 5th - Introduction / Single Subject Analysis / ROI Analysis

Time

Title

Type

Lecturer

9:00 - 9:30

** Intro to Linux for FreeSurfer Users

talk/demo

Emma Boyd

9:30 - 9:45

** Intro to FreeSurfer Jargon

talk

Emma Boyd

9:45 - 10:15

Introduction to Freesurfer

talk

Anastasia Yendiki

10:15 - 11:25

Analyzing the Individual Subject

talk

Emma Boyd

11:25 - 11:45

break

11:45 - 12:00

Freeview demonstration

demo

Emma Boyd

12:00 - 12:30

Interaction with Individual Subject Data Tutorial

talk

Emma Boyd

12:30 - 12:45

Interaction with Individual Subject Data Tutorial

tutorial

staff

12:45 - 13:15

Surface-based Analysis: Intersubject Registration & Smoothing

talk

TBD

13:15 - 14:45

Lunch

--

--

14:45 - 15:45

ROI Analysis

talk

TBD

15:45 - 16:25

ROI Analysis Tutorial

tutorial

staff

16:25 - 16:55

** A Non-physicist's Intro to MR (SpinBench)

talk

Emma Boyd

Wednesday, September 6th - Group Analysis / Longitudinal Analysis / Troubleshooting

Time

Title

Type

Lecturer

9:00 - 9:50

Group Analysis

talk

Emily Lindemer

9:50 - 10:30

Group Analysis Tutorial

tutorial

staff

10:30 - 10:50

break

10:50 - 11:10

Multiple Comparisons

talk

Doug Greve

11:10 - 11:30

Multiple Comparisons Tutorial

tutorial

staff

11:30 - 11:50

QDEC demonstration

demo

Doug Greve

11:50 - 12:50

Lunch

--

--

12:50 - 1:30

QDEC Tutorial

tutorial

staff

1:30 - 2:00

FreeSurfer Troubleshooting

talk

Bruce Fischl

2:00 - 3:00

Troubleshooting Tutorial

tutorial

staff

3:00 - 3:20

break

3:20 - 4:20

Quality Checking a Recon

demo

Allison Stevens

4:20 - 5:05

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Lilla Zöllei

5:05 - 5:35

Longitudinal Tutorial

tutorial

staff

6:30 - ?

Boston Beer Works

social activity

you!

Thursday, September 7th - Multimodal Analysis / Diffusion Analysis / fMRI Analysis / MR Acquisition

Time

Title

Type

Lecturer

9:00 - 9:30

Multi-Modal Integration, Part 1: Registration

talk

Lilla Zöllei

9:30 - 10:00

Multi-Modal Integration Tutorial, Part 1

tutorial

staff

10:00 - 10:15

** A Non-Physicist's Intro to Diffusion MRI Physics

talk

Robert Frost

10:15 - 10:35

break

10:35 - 11:15

Introduction to Diffusion MRI

talk

Anastasia Yendiki

11:15 - 12:00

Diffusion Processing Tutorial

tutorial

staff

12:00 - 1:00

Lunch

--

--

1:00 - 1:50

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

1:50 - 2:50

Tracula Tutorial

tutorial

staff

2:50 - 3:00

Longitudinal TRACULA

talk

Anastasia Yendiki

3:00 - 3:20

break

3:20 - 4:20

Basics of fMRI Analysis

talk

Jon Polimeni

4:20 - 4:50

* MRI Acquisition Methods

talk

André van der Kouwe

Friday, September 8th - fMRI Analysis / Multimodal Analysis / Future Directions

Time

Title

Type

Lecturer

9:00 - 9:30

FSFAST, Part 1: Preprocessing

talk

Doug Greve

9:30 - 10:00

FSFAST Tutorial, Part 1

tutorial

staff

10:00 - 10:20

break & Evaluation

10:20 - 11:20

FSFAST, Part 2: GLM Analysis

talk

Doug Greve

11:20 - 12:00

FSFAST Tutorial, Part 2

tutorial

staff

12:00 - 1:00

Lunch

--

--

1:00 - 1:30

Multi-Modal Integration, Part 2: Group Analysis

talk

Doug Greve

1:30 - 2:00

Multi-Modal Integration Tutorial, Part 2

tutorial

staff

2:00 - 2:30

* An Overview of Registration Methods

talk

Lilla Zöllei

2:30 - 3:00

Future Directions

talk

Bruce Fischl

* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk covering basic/beginner material.

Payment

Cost

Deadlines & Accepted Payment Types

The Payment deadline is February 2, 2017 for all payment forms except for institutional check. The payment deadline for those sending an institutional check is March 6, 2017 with the expectation that we will be contacted by your financial institution by February 2, 2017 to confirm a check is being issued. As long as there are empty spots in the course, we will accept late registrations (regardless of the payment deadline). If you register after the payment deadline has passed, payment is due immediately. Payment and all questions about payment should sent to Stacey Ladieu (sladieu at martinos dot org). Please Allison (astevens at martinos dot org) on your emails with Stacey so she can update your payment status accordingly.

Missed Deadlines & Cancellations

If payment has not been received by the payment deadline or in the case of an institutional check, your institution has not contacted Stacey Ladieu (sladieu at martinos dot org) with details of their payment arrangement by that date, your spot will be opened to the waiting list. There is no need to contact us to check whether your payment has gone through - your spot is safe unless we contact you.

Course fees are refundable up to the payment deadline. A $200 fee will be deducted, should you request a refund up to 2 weeks prior to the program. After that, the tuition can be applied to a future program or you can send someone in your place.

FAQ

  1. How many individuals are accepted into the Barcelona course?

    • 60 people
  2. Do postdocs qualify for the student rate?

    • No, sorry.
  3. The course is full. Can you register me for the next one?

    • You can sign up for our course mailing list and you will be notified when registration for the next course opens (that list is here). You can also register for the currently full course to be put on the waiting list for it. This does not however automatically get you a spot in the next course.

  4. Can I get a receipt for the course?

    • Sure! Paper receipts will be available on the first day of the course. If you need a receipt or invoice before then to get a check issued or reimbursed, please use the confirmation email you received when you registered for the course.
  5. How do I know if my payment went through?

    • Julieta will contact you when payment is received.
  6. Do I get any credits for taking this course?

    • No, but we will give you a certificate to prove you took it.
  7. Can I bring my own laptop to work on instead of sharing with someone else?

    • If any issues arise during the tutorial sessions which are unique to your laptop, we will not be able to troubleshoot those issues for you (it takes staff away from answering general tutorial questions). We strongly discourage using your own laptop instead of the ones we provide. If you insist on working on your laptop, please thoroughly test your installation ahead of time - guidelines for this can be found on the TestingFreeSurfer wiki. It might also be a good idea to try to run all the commands in the tutorials (here).

Lecturers

  • Anastasia Yendiki
  • Emma Boyd
  • Isik Karahanoglu

Accommodations

Details to come.

FsTutorial/BarcelonaSept2017CourseSchedule (last edited 2017-09-11 08:48:51 by EmmaBoyd)