FreeSurfer Course, April 29 - May 1, 2013
MGH, Charlestown Navy Yard, Building 114, Room D1

Fill out the Course evaluation here!!!

Monday, April 29th - Introduction / Single Subject / Registration / Troubleshooting

Time

Title

Type

Lecturer

8:00 - 8:30

optional - Unix Tutorial for FreeSurfer Users

tutorial

Maritza Ebling

8:30 - 9:00

optional - Intro to FreeSurfer Jargon

talk

Melanie Ganz

8:30 - 9:00

Course Registration

sign-in

staff

9:00 - 9:30

Introduction to Freesurfer

talk

Doug Greve

9:30 - 10:30

Analyzing the Individual Subject

talk

Doug Greve

10:30 - 10:50

break

10:50 - 11:10

Freeview/Tksurfer demonstration

demo

Doug Greve

11:10 - 11:40

Interaction with Individual Subject Data Tutorial

tutorial

staff

11:40 - 12:20

Surface-based Analysis: Intersubject Smoothing & Registration

talk

Doug Greve

12:20 - 1:20

Lunch (Suggestions for where to eat)

--

--

12:35 - 1:20

Optional Lunch Talk- A Non-physicist's Intro to MR SpinBench

talk

Dylan Tisdall

1:20 - 2:00

FreeSurfer Troubleshooting

talk

David Salat

2:00 - 3:00

Quality Checking a Recon

demo

David Salat

3:00 - 3:20

break

3:20 - 3:40

Troubleshooting Demonstration

demo

Louis Vinke

3:40 - 4:40

Troubleshooting Tutorial

tutorial

staff

Tuesday, April 30th - ROIs / Longitudinal / Multimodal / Group Analysis

Time

Title

Type

Lecturer

9:00 - 9:40

ROI Analysis

talk

Doug Greve

9:40 - 10:10

ROI Analysis Tutorial

tutorial

staff

10:10 - 10:30

break

10:30 - 11:30

Group Analysis / GLM / Multiple Comparisons

talk

Melanie Ganz

11:30 - 11:50

QDEC demonstration

demo

Nick Schmansky

11:50 - 12:50

Lunch

--

--

12:20 - 12:50

Optional Lunch Talk- MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

12:50 - 1:50

Group Analysis / Multiple Comparisons - mri_glmfit Tutorial

tutorial

staff

12:50 - 1:50

Group Analysis - qdec Tutorial

tutorial

staff

1:50 - 2:20

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

2:20 - 2:40

break

2:40 - 3:40

Longitudinal Tutorial

tutorial

staff

3:40 - 4:40

Multi-Modal Integration

talk

Doug Greve

4:40 - 5:00

Registration Methods

talk

Lilla Zollei

5:00 - 5:45

Multi-Modal Integration Tutorial

tutorial

staff

Boston Beer Works location information here and here.
Meet us at 6:10pm at the front of Building 149 (map to be provided soon).
If you miss us, we are taking the 6:15pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).
From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.

Wednesday, May 1st - fMRI / Diffusion / Q&A

The Course Evaluation has been posted. Please feel free to start filling it out!

Time

Title

Type

Lecturer

9:00 - 10:00

Basics of fMRI Analysis

talk

Jon Polimeni

10:00 - 10:40

FSFAST

talk

Doug Greve

10:40 - 11:00

break

11:00 - 11:40

FSFAST continued

talk

Doug Greve

11:40 - 12:40

FSFAST Tutorial

tutorial

staff

12:40 - 1:40

Lunch

--

--

1:10 - 1:40

Optional Lunch Talk- Motion-compensated neuroanatomical imaging

talk

Dylan Tisdall

1:40 - 2:20

Introduction to Diffusion MRI

talk

Anastasia Yendiki

2:20 - 2:50

Diffusion Processing Tutorial

tutorial

staff

2:50 - 3:10

break & Evaluation

3:10 - 3:40

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

3:40 - 4:25

Tracula Tutorial

tutorial

staff

4:25 - 5:00

Future Directions - Optical Coherence Tomography

talk

Caroline Magnain

5:00 - 5:30

Question and Answer Session (Answers to online questions here), FsQuiz

talk

staff

The FreeSurfer Evaluation is here!

FsTutorial/May2013CourseSchedule (last edited 2013-05-01 14:59:58 by LouisVinke)