Diff for "FsTutorial/May2013CourseSchedule"

Differences between revisions 15 and 16

FreeSurfer Course, April 29 - May 1, 2013
MGH, Charlestown Navy Yard, Building 114, Room D1

Monday, April 29th - Introduction / Single Subject / Registration / Troubleshooting

Time	Title	Type	Lecturer
8:00 - 8:30	optional - Unix Tutorial for FreeSurfer Users	tutorial	Maritza Ebling
8:30 - 9:00	optional - Intro to FreeSurfer Jargon	talk	Melanie Ganz
8:30 - 9:00	Course Registration	sign-in	staff
9:00 - 9:30	Introduction to Freesurfer	talk	Doug Greve
9:30 - 10:30	Analyzing the Individual Subject	talk	Doug Greve
10:30 - 10:50	break
10:50 - 11:10	Freeview/Tksurfer demonstration	demo	Doug Greve
11:10 - 11:40	Interaction with Individual Subject Data Tutorial	tutorial	staff
11:40 - 12:20	Surface-based Analysis: Intersubject Smoothing & Registration	talk	Doug Greve
12:20 - 1:20	Lunch (Suggestions for where to eat)	--	--
12:35 - 1:20	Optional Lunch Talk- A Non-physicist's Intro to MR SpinBench	talk	Dylan Tisdall
1:20 - 2:00	FreeSurfer Troubleshooting	talk	Allison Stevens
2:00 - 3:00	Quality Checking a Recon	demo	Allison Stevens
3:00 - 3:20	break
3:20 - 3:40	Troubleshooting Demonstration	demo	Louis Vinke
3:40 - 4:40	Troubleshooting Tutorial	tutorial	staff

Tuesday, April 30th - ROIs / Longitudinal / Multimodal / Group Analysis

Time	Title	Type	Lecturer
9:00 - 9:40	ROI Analysis	talk	Doug Greve
9:40 - 10:10	ROI Analysis Tutorial	tutorial	staff
10:10 - 10:30	break
10:30 - 11:30	Group Analysis / GLM / Multiple Comparisons	talk	Melanie Ganz
11:30 - 11:50	QDEC demonstration	demo	Nick Schmansky
11:50 - 12:50	Lunch	--	--
12:20 - 12:50	Optional Lunch Talk- MRI Acquisition Methods for Morphometry	talk	Andre van der Kouwe
12:50 - 1:50	Group Analysis / Multiple Comparisons - mri_glmfit Tutorial	tutorial	staff
12:50 - 1:50	Group Analysis - qdec Tutorial	tutorial	staff
1:50 - 2:20	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
2:20 - 2:40	break
2:40 - 3:40	Longitudinal Tutorial	tutorial	staff
3:40 - 4:40	Multi-Modal Integration	talk	Doug Greve
4:40 - 5:00	Registration Methods	talk	Lilla Zollei
5:00 - 5:45	Multi-Modal Integration Tutorial	tutorial	staff

Boston Beer Works location information here and here.
Meet us at 6:10pm at the front of Building 149 (map to be provided soon).
If you miss us, we are taking the 6:15pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).
From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.

Wednesday, May 1st - fMRI / Diffusion / Q&A

Time	Title	Type	Lecturer
9:00 - 10:00	Basics of fMRI Analysis	talk	Jon Polimeni
10:00 - 10:40	FSFAST	talk	Doug Greve
10:40 - 11:00	break
11:00 - 11:40	FSFAST continued	talk	Doug Greve
11:40 - 12:40	FSFAST Tutorial	tutorial	staff
12:40 - 1:40	Lunch	--	--
1:10 - 1:40	Optional Lunch Talk- Motion-compensated neuroanatomical imaging	talk	Dylan Tisdall
1:40 - 2:20	Introduction to Diffusion MRI	talk	Anastasia Yendiki
2:20 - 2:50	Diffusion Processing Tutorial	tutorial	staff
2:50 - 3:10	break & Evaluation
3:10 - 3:40	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
3:40 - 4:25	Tracula Tutorial	tutorial	staff
4:25 - 5:00	Future Directions	talk	Bruce Fischl
5:00 - 5:30	Question and Answer Session, FsQuiz	talk	staff

FsTutorial/May2013CourseSchedule (last edited 2013-05-01 14:59:58 by LouisVinke)

-Deletions are marked like this.
+Additions are marked like this.
 Line 10:
-||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || '''Give us your feedback''' ||

||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|online practice]] ||tutorial || Maritza Ebling ||  ||

||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk || Melanie Ganz ||          ||

||8:30 - 9:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2011.jpg|staff]] ||       ||

||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl ||          ||

||9:30 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || Bruce Fischl ||          ||

||10:30 - 10:50 ||'''break''' || || || ||

||10:50 - 11:10 ||Freeview/Tksurfer demonstration ||demo ||Doug Greve ||       ||

||11:10 - 11:40 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||         ||

||11:40 - 12:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration|&do=get]] ||talk ||Doug Greve ||     ||
+||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||

||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial || Maritza Ebling ||

||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk || Melanie Ganz ||

||8:30 - 9:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2011.jpg|staff]] ||

||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk || Doug Greve ||

||9:30 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || Doug Greve ||

||10:30 - 10:50 ||'''break''' || || ||

||10:50 - 11:10 ||Freeview/Tksurfer demonstration ||demo ||Doug Greve ||

||11:10 - 11:40 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||

||11:40 - 12:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration|&do=get]] ||talk ||Doug Greve ||
 Line 21:
-||''12:35 - 1:20'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||''talk'' ||''Dylan Tisdall'' ||          ||

||1:20 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting|&do=get]] ||talk ||Bruce Fischl ||          ||

||2:00 - 3:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt | Quality Checking a Recon]] ||demo ||Allison Stevens ||      ||

||3:00 - 3:20 ||'''break''' || || || ||

||3:20 - 3:40 ||Troubleshooting Demonstration || demo || Louis Vinke ||         ||

||3:40 - 4:40 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||      ||
+||''12:35 - 1:20'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||''talk'' ||''Dylan Tisdall'' ||

||1:20 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting|&do=get]] ||talk ||Allison Stevens ||

||2:00 - 3:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt | Quality Checking a Recon]] ||demo ||Allison Stevens ||

||3:00 - 3:20 ||'''break''' || || ||

||3:20 - 3:40 ||Troubleshooting Demonstration || demo || Louis Vinke ||

||3:40 - 4:40 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
 Line 34:
-||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || '''Give us your feedback''' ||

||9:00 - 9:40  ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve ||    ||

||9:40 - 10:10  ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||         ||

||10:10 - 10:30 ||'''break''' || || ||

||10:30 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || Melanie Ganz ||          ||

||11:30 - 11:50 ||QDEC demonstration ||demo ||Nick Schmansky ||             ||
+||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||

||9:00 - 9:40  ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve ||

||9:40 - 10:10  ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||

||10:10 - 10:30 ||'''break''' || ||

||10:30 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || Melanie Ganz ||

||11:30 - 11:50 ||QDEC demonstration ||demo ||Nick Schmansky ||
 Line 41:
-||''12:20 - 12:50'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' ||''talk'' ||''Andre van der Kouwe'' ||           ||

||12:50 - 1:50 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||            ||

||12:50 - 1:50 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||           ||

||1:50 - 2:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||        ||

||2:20 - 2:40 ||'''break''' || || ||

||2:40 - 3:40 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||            ||

||3:40 - 4:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve ||           ||

||4:40 - 5:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei ||           ||

||5:00 - 5:45 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||             ||
+||''12:20 - 12:50'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' ||''talk'' ||''Andre van der Kouwe'' ||

||12:50 - 1:50 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||

||12:50 - 1:50 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||

||1:50 - 2:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||

||2:20 - 2:40 ||'''break''' || ||

||2:40 - 3:40 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||

||3:40 - 4:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve ||

||4:40 - 5:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei ||

||5:00 - 5:45 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
 Line 62:
-||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || '''Give us your feedback''' ||

||9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fMRI_intro.ppt|Basics of fMRI Analysis|&do=get]] ||talk || Jon Polimeni ||            ||

||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve ||             ||

||10:40 - 11:00 ||'''break''' || || ||

||11:00 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] continued ||talk ||Doug Greve ||             ||

||11:40 - 12:40 ||[[FsFastTutorialV5.1|FSFAST Tutorial]] ||tutorial ||staff ||            ||
+||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||

||9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fMRI_intro.ppt|Basics of fMRI Analysis|&do=get]] ||talk || Jon Polimeni ||

||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve ||

||10:40 - 11:00 ||'''break''' || ||

||11:00 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] continued ||talk ||Doug Greve ||

||11:40 - 12:40 ||[[FsFastTutorialV5.1|FSFAST Tutorial]] ||tutorial ||staff ||
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-||''1:10 - 1:40'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' ||             ||

||1:40 - 2:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki ||              ||

||2:20 - 2:50 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||                      ||

||2:50 - 3:10 ||'''break''' & Evaluation || || ||

||3:10 - 3:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki ||              ||

||3:40 - 4:25 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||                  ||

||4:25 - 5:00 ||Future Directions ||talk ||Bruce Fischl ||           ||

||5:00 - 5:30 ||Question and Answer Session, FsQuiz ||talk ||staff ||                    ||
+||''1:10 - 1:40'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' ||

||1:40 - 2:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki ||

||2:20 - 2:50 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||

||2:50 - 3:10 ||'''break''' & Evaluation || ||

||3:10 - 3:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki ||

||3:40 - 4:25 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||

||4:25 - 5:00 ||Future Directions ||talk ||Bruce Fischl ||

||5:00 - 5:30 ||Question and Answer Session, FsQuiz ||talk ||staff ||