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Surfa
User Guide
Installation
Images
Meshes and Surfaces
Visualization
Coordinate Systems
API Reference
Image Array
surfa.Volume
surfa.Slice
Mesh and Surface
surfa.Mesh
surfa.Overlay
surfa.mesh.sphere.cartesian_to_spherical
surfa.mesh.sphere.spherical_to_cartesian
surfa.mesh.sphere.mesh_is_sphere
surfa.mesh.sphere.require_sphere
surfa.mesh.sphere.SphericalMapBarycentric
surfa.mesh.sphere.SphericalMapNearest
surfa.mesh.sphere.SphericalResamplingBarycentric
surfa.mesh.sphere.SphericalResamplingNearest
Geometry and Space
surfa.ImageGeometry
surfa.transform.geometry.cast_image_geometry
surfa.Space
surfa.transform.space.cast_space
surfa.transform.orientation.orientation_to_rotation_matrix
surfa.transform.orientation.rotation_matrix_to_orientation
surfa.transform.orientation.slice_direction
surfa.transform.orientation.check_orientation
Affine
surfa.Affine
surfa.transform.identity
surfa.transform.affine_equal
surfa.transform.cast_affine
surfa.transform.compose_affine
surfa.transform.random_affine
surfa.transform.affine.angles_to_rotation_matrix
surfa.transform.affine.rotation_matrix_to_angles
IO
surfa.load_volume
surfa.load_slice
surfa.load_overlay
surfa.load_mesh
surfa.load_affine
surfa.load_label_lookup
surfa.io.fsio.load_surface_label
surfa.io.check_file_readability
Visualization
surfa.vis.Freeview
surfa.vis.freeview.FreeviewAnnot
surfa.vis.freeview.FreeviewOverlay
surfa.vis.fv
System Utilities
surfa.system.run
surfa.system.collect_output
surfa.system.readlines
surfa.system.fatal
surfa.system.vmpeak
surfa.system.hostname
.rst
.pdf
surfa.vis.freeview.FreeviewOverlay
surfa.vis.freeview.FreeviewOverlay
#
class
surfa.vis.freeview.
FreeviewOverlay
(
arr
,
name
=
'overlay'
,
threshold
=
None
,
opacity
=
None
)
#
Configuration for freeview overlays.
Methods
tags
(
)
#