Index

A

add_flag() (surfa.vis.Freeview method) add_image() (surfa.vis.Freeview method) add_mesh() (surfa.vis.Freeview method) Affine (class in surfa) affine() (surfa.ImageGeometry method)

affine_equal() (in module surfa.transform) angles_to_rotation_matrix() (in module surfa.transform.affine) astype() (surfa.Overlay method) (surfa.Slice method) (surfa.Volume method)

B

barycenters() (surfa.Slice method) (surfa.Volume method)

bbox() (surfa.Mesh method) (surfa.Slice method) (surfa.Volume method)

C

cartesian_to_spherical() (in module surfa.mesh.sphere) cast_affine() (in module surfa.transform) cast_image_geometry() (in module surfa.transform.geometry) cast_space() (in module surfa.transform.space) ceil() (surfa.Overlay method) (surfa.Slice method) (surfa.Volume method) check_file_readability() (in module surfa.io) check_orientation() (in module surfa.transform.orientation) clip() (surfa.Overlay method) (surfa.Slice method) (surfa.Volume method) collapse() (surfa.Overlay method) (surfa.Slice method) (surfa.Volume method) collect_output() (in module surfa.system) compose_affine() (in module surfa.transform)

conform() (surfa.Slice method) (surfa.Volume method) connected_component_mask() (surfa.Slice method) (surfa.Volume method) connected_components() (surfa.Slice method) (surfa.Volume method) convert() (surfa.Affine method) (surfa.Mesh method) copy() (surfa.Affine method) (surfa.ImageGeometry method) (surfa.Mesh method) (surfa.Overlay method) (surfa.Slice method) (surfa.Space method) (surfa.Volume method) crop_to_bbox() (surfa.Slice method) (surfa.Volume method)

D

decompose() (surfa.Affine method) det() (surfa.Affine method) dilate() (surfa.Slice method) (surfa.Volume method)

distance() (surfa.Slice method) (surfa.Volume method)

E

erode() (surfa.Slice method) (surfa.Volume method)

extract_sub_images() (surfa.Slice method) (surfa.Volume method)

F

face_to_vertex_overlay() (surfa.Mesh method) fatal() (in module surfa.system) find_self_intersecting_faces() (surfa.Mesh method) fit_to_shape() (surfa.Slice method) (surfa.Volume method) floor() (surfa.Overlay method) (surfa.Slice method) (surfa.Volume method)

Freeview (class in surfa.vis) FreeviewAnnot (class in surfa.vis.freeview) FreeviewOverlay (class in surfa.vis.freeview) fv() (in module surfa.vis)

H

hostname() (in module surfa.system)

I

identity() (in module surfa.transform)

ImageGeometry (class in surfa) inv() (surfa.Affine method)

L

load_affine() (in module surfa) load_label_lookup() (in module surfa) load_mesh() (in module surfa)

load_overlay() (in module surfa) load_slice() (in module surfa) load_surface_label() (in module surfa.io.fsio) load_volume() (in module surfa)

M

max() (surfa.Overlay method) (surfa.Slice method) (surfa.Volume method) mean() (surfa.Overlay method) (surfa.Slice method) (surfa.Volume method)

Mesh (class in surfa) mesh_is_sphere() (in module surfa.mesh.sphere) min() (surfa.Overlay method) (surfa.Slice method) (surfa.Volume method)

N

nearest_vertex() (surfa.Mesh method) new() (surfa.Affine method) (surfa.Overlay method) (surfa.Slice method) (surfa.Volume method)

O

onehot() (surfa.Overlay method) (surfa.Slice method) (surfa.Volume method)

orientation_to_rotation_matrix() (in module surfa.transform.orientation) Overlay (class in surfa)

P

parameterize() (surfa.mesh.sphere.SphericalMapBarycentric method) (surfa.mesh.sphere.SphericalMapNearest method)

percentile() (surfa.Overlay method) (surfa.Slice method) (surfa.Volume method)

R

random_affine() (in module surfa.transform) readlines() (in module surfa.system) remove_self_intersections() (surfa.Mesh method) reorient() (surfa.Slice method) (surfa.Volume method) require_sphere() (in module surfa.mesh.sphere) resample_like() (surfa.Slice method) (surfa.Volume method) reshape() (surfa.ImageGeometry method) (surfa.Slice method) (surfa.Volume method)

resize() (surfa.Slice method) (surfa.Volume method) rotation_matrix_to_angles() (in module surfa.transform.affine) rotation_matrix_to_orientation() (in module surfa.transform.orientation) round() (surfa.Overlay method) (surfa.Slice method) (surfa.Volume method) run() (in module surfa.system)

S

sample() (surfa.mesh.sphere.SphericalMapBarycentric method) (surfa.mesh.sphere.SphericalMapNearest method) (surfa.mesh.sphere.SphericalResamplingBarycentric method) (surfa.mesh.sphere.SphericalResamplingNearest method) (surfa.Slice method) (surfa.Volume method) save() (surfa.Affine method) (surfa.Mesh method) (surfa.Overlay method) (surfa.Slice method) (surfa.Volume method) shearless_components() (surfa.ImageGeometry method) show() (surfa.vis.Freeview method)

signed_distance() (surfa.Slice method) (surfa.Volume method) Slice (class in surfa) slice_direction() (in module surfa.transform.orientation) smooth() (surfa.Slice method) (surfa.Volume method) smooth_overlay() (surfa.Mesh method) Space (class in surfa) sparse_neighborhood() (surfa.Mesh method) spherical_to_cartesian() (in module surfa.mesh.sphere) SphericalMapBarycentric (class in surfa.mesh.sphere) SphericalMapNearest (class in surfa.mesh.sphere) SphericalResamplingBarycentric (class in surfa.mesh.sphere) SphericalResamplingNearest (class in surfa.mesh.sphere)

T

tags() (surfa.vis.freeview.FreeviewOverlay method) to_warp() (surfa.Affine method) transform() (surfa.Affine method) (surfa.Mesh method) (surfa.Slice method) (surfa.Volume method)

U

unique() (surfa.Overlay method) (surfa.Slice method) (surfa.Volume method)

update() (surfa.ImageGeometry method)

V

vertex_to_face_overlay() (surfa.Mesh method)

vmpeak() (in module surfa.system) Volume (class in surfa)

Z

zeros() (surfa.Overlay method) (surfa.Slice method) (surfa.Volume method)