Fall 2019 FreeSurfer Course: September 23rd - 26th

8:00 - 9:30am Registration Desk Open

* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk that covers basic/beginner material.
*** Indicates optional extra time to work on tutorials and/or ask questions about your own data.

Research backgrounds of past and present staff members can be found on the LCN website.

Monday, September 23rd - Introduction / Single Subject Analysis / ROI Analysis

Time

Title

Type

Lecturer

8:30 - 8:40

** Intro to Linux for FreeSurfer Users

talk/demo

Matthew Larrabee

8:40 - 9:00

** Unix for FreeSurfer Users

tutorial

9:00 - 9:15

** Intro to FreeSurfer Jargon

talk

Caroline Magnain

9:15 - 9:25

break

9:25 - 10:10

Introduction to Freesurfer

talk

Bruce Fischl

10:10 - 11:20

Analyzing the Individual Subject

talk

Doug Greve

11:20 - 11:40

break

11:40 - 12:00

Freeview demonstration

demo

Bram Diamond

12:00 - 12:30

Introduction to FreeSurfer Output

tutorial

staff

12:30 - 1:30

Lunch (Suggestions for where to eat)

1:30 - 1:45

Introduction to FreeSurfer Output

tutorial

staff

1:45 - 2:15

Surface-based Analysis: Intersubject Registration & Smoothing

talk

Diyva Varadarajan

2:15 - 2:35

break

2:35 - 3:05

ROI Analysis

talk

Doug Greve

3:05 - 3:50

ROI Analysis Tutorial

tutorial

staff

3:50 - 4:20

Structural & Functional Data Integration

talk

David Salat

4:20 - 4:50

Practice Working with Data

tutorial

staff

Answers to online questions here

Tuesday, September 24th - Group Analysis / Longitudinal Analysis / Troubleshooting

Time

Title

Type

Lecturer

8:00 - 9:00

*** Morning Help Session

research technicians

9:00 - 9:45

Group Analysis

talk

Viviana Siless

9:45 - 10:25

Group Analysis Tutorial (FSGD Examples)

tutorial

staff

10:25 - 10:45

break

10:45 - 11:30

FreeSurfer Troubleshooting

talk

Bruce Fischl

11:30 - 12:30

Troubleshooting Tutorial

tutorial

staff

12:30 - 1:30

Lunch

1:30 - 2:15

Quality Checking a Recon

talk

Leah Morgan

2:15 - 2:55

Multiple Comparisons

talk

Doug Greve

2:55 - 3:25

Multiple Comparisons Tutorial

tutorial

staff

3:25 - 4:05

break

4:05 - 4:50

Longitudinal FreeSurfer

talk

Malte Hoffmann

4:50 - 5:30

LongitudinalTutorial

tutorial

staff

5:30 - 7:30

Social Night in the atrium of Bldg. 149

Snacks and Beverages Served

Answers to online questions here

Wednesday, September 25th - Multimodal Analysis / Diffusion Analysis / fMRI Analysis / MR Acquisition

Time

Title

Type

Lecturer

8:00 - 9:00

*** Morning Help Session

research technicians

9:00 - 9:30

* Intro to MR (SpinBench)

talk

Robert Frost

9:30 - 10:00

Multi-Modal Integration, Part 1: Registration

talk

Aina Frau-Pascual

10:00 - 10:30

Multi-Modal Integration Tutorial, Part 1

tutorial

staff

10:30 - 10:50

break

10:50 - 11:05

* Intro to Diffusion MRI Physics

talk

Robert Frost

11:05 - 11:45

Introduction to Diffusion MRI

talk

Anastasia Yendiki

11:45 - 12:30

Diffusion Processing Tutorial

tutorial

staff

12:30 - 1:30

Lunch

--

--

1:30 - 2:20

Tracts Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

2:20 - 3:20

TRACULA Tutorial

tutorial

staff

3:20 - 3:40

break

3:40 - 3:50

Longitudinal TRACULA

talk

Anastasia Yendiki

3:50 - 4:50

Basics of fMRI Analysis

talk

Jingyuan Chen

4:50 - 5:30

* MRI Acquisition Methods

talk

Andre van der Kouwe

Answers to online questions here

The FreeSurfer Evaluation is here!

Thursday, September 26th - fMRI Analysis / Multimodal Analysis / Future Directions

Time

Title

Type

Lecturer

8:00 - 9:00

*** Morning Help Session

research technicians

9:00 - 9:30

FSFAST, Part 1: Preprocessing

talk

Doug Greve

9:30 - 10:00

FSFAST Tutorial, Part 1

tutorial

staff

10:00 - 10:20

break & Evaluation

10:20 - 11:20

FSFAST, Part 2: GLM Analysis

talk

Doug Greve

11:20 - 12:00

FSFAST Tutorial, Part 2

tutorial

staff

12:00 - 1:00

Lunch

1:00 - 1:30

* An Overview of Registration Methods

talk

Lilla Zöllei

1:30 - 1:45

Resting State fMRI

talk

Doug Greve

1:45 - 2:15

Multi-Modal Integration, Part 2: Group Analysis

talk

Doug Greve

2:15 - 3:00

Multi-Modal Integration Tutorial, Part 2

tutorial

staff

3:00 - 3:15

break

3:15 - 3:30

* FreeSurfer vs. VBM

talk

Doug Greve

3:30 - 4:30

* Future Directions

talk

FS Development Team

4:30 - 5:00

Question & Answer Session

staff

Answers to online questions here


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FsTutorial/Fall2019CourseSchedule (last edited 2019-09-26 14:04:43 by AllisonStevens)