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 * [[https://surfer.nmr.mgh.harvard.edu/pub/articles/1-s2.0-S1053811911011013-main.pdf|Genetic influences on hippocampal volume differ as a function of testoterone level in middle-aged men]], Matthew S. Panizzon, Richard L. Hauger, Lindon J. Eaves, Chi-Hua Chen, Anders M. Dale, Lisa T. Eyler, Bruce Fischl, Christine Fennema-Notestine, Carol E. Franz, Michael D. Grant, Kristen C. Jacobson, Amy J. Jak, Michael J. Lyons, Sally P. Mendoza, Michael C. Neale, Elizabeth Prom-Wormley, Larry J. Seidman, Ming T. Tsuang, Hong Xian, William S. Kremen (2011). doi:10.1016/j.neuroimage.2011.09.044


Published material describing the techniques used in FreeSurfer (please cite our software!, see also boilerplate text):

surface reconstruction

inter-subject spherical averaging

thickness measurement

cortical parcellation

subcortical segmentation

longitudinal processing

related methodological papers



Published material citing Freesurfer:

cortical thickness

cortical surface area

local gyrification index (LGI)

clinical biomarkers


white matter


entorhinal cortex

  • Detection of entorhinal layer II using 7 Tesla magnetic resonance imaging, Augustinack, Jean C., Andre J. W. van der Kouwe, Megan L. Blackwell, David H. Salat, Christopher J. Wiggins, Matthew P. Frosch, Graham C. Wiggins, Andreas Potthast, Lawrence L. Wald, Bruce R. Fischl, (2005). Annals of Neurology, 57(4):489-494.

  • Predicting the location of entorhinal cortex from MRI, B. Fischl, A. A. Stevens, N. Rajendran, B. T. T.Yeo, D. N. Greve, K. V. Leemput, J. R. Polimeni, S. Kakunoori, R. L. Buckner, J. Pacheco, D. H. Salat, J. Melcher, M. P. Frosch, B. T. Hyman, P. E. Grant, B. R. Rosen, A. J.W. van der Kouwe, G. C. Wiggins, L. L. Wald, J. C. Augustinack, (2009). NeuroImage (2009).

cortical surface shape and folding analysis

surface-based analysis (SBA)


diffusion analysis

CBF - cerebral blood flow

cortical flat-patches



Publications (last edited 2021-05-03 08:49:05 by DevaniCordero)