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 * [[http://www.ncbi.nlm.nih.gov/pubmed/22248573|FreeSurfer]], Bruce Fischl. NeuroImage, 2012 Jan 10.  * [[http://www.sciencedirect.com/science/article/pii/S1053811912000389|FreeSurfer]], Fischl B (2012). NeuroImage 62(2):774-781.
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 * [[http://surfer.nmr.mgh.harvard.edu/pub/articles/winkler2012_facewisearea.pdf|Measuring and comparing brain cortical surface area and other areal quantities.]] Winkler AM, Sabuncu MR, Yeo BT, Fischl B, Greve DN, Kochunov P, Nichols TE, Blangero J, Glahn DC (2012). Neuroimage 61(4):1428-43.


Published material describing the methods used in FreeSurfer (please cite our software!, see also boilerplate text):

surface reconstruction

inter-subject spherical averaging

thickness measurement

cortical parcellation

subcortical segmentation

longitudinal processing

related methodological papers



Published material citing Freesurfer:

(If you have a citation you would like to include in this list please e-mail your request to vinke[at]nmr.mgh.harvard.edu)

cortical thickness

cortical surface area

local gyrification index (LGI)

clinical biomarkers


white matter


entorhinal cortex

  • Detection of entorhinal layer II using 7 Tesla magnetic resonance imaging, Augustinack, Jean C., Andre J. W. van der Kouwe, Megan L. Blackwell, David H. Salat, Christopher J. Wiggins, Matthew P. Frosch, Graham C. Wiggins, Andreas Potthast, Lawrence L. Wald, Bruce R. Fischl, (2005). Annals of Neurology, 57(4):489-494.

  • Predicting the location of entorhinal cortex from MRI, B. Fischl, A. A. Stevens, N. Rajendran, B. T. T.Yeo, D. N. Greve, K. V. Leemput, J. R. Polimeni, S. Kakunoori, R. L. Buckner, J. Pacheco, D. H. Salat, J. Melcher, M. P. Frosch, B. T. Hyman, P. E. Grant, B. R. Rosen, A. J.W. van der Kouwe, G. C. Wiggins, L. L. Wald, J. C. Augustinack, (2009). NeuroImage (2009).

cortical surface shape and folding analysis

surface-based analysis (SBA)


diffusion analysis

CBF - cerebral blood flow

cortical flat-patches


validation / evaluation

Publications (last edited 2021-05-03 08:49:05 by DevaniCordero)