Methods


Published material describing the methods used in FreeSurfer (please cite our software!, see also boilerplate text):

surface reconstruction

inter-subject spherical averaging

thickness measurement

cortical parcellation

subcortical segmentation

longitudinal processing

related methodological papers


Citations


Published material citing Freesurfer:

cortical thickness

cortical surface area

local gyrification index (LGI)

clinical biomarkers

volumetric

white matter

longitudinal

entorhinal cortex

cortical surface shape and folding analysis

surface-based analysis (SBA)

SBA vs. VBM

diffusion analysis

CBF - cerebral blood flow

cortical flat-patches

FS-FAST

evaluations