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 * [[https://surfer.nmr.mgh.harvard.edu/pub/articles/HBM09-Destrieux-Sulcal.pdf|A sulcal depth-based anatomical parcellation of the cerebral cortex]], Destrieux, C., B. Fischl, A. Dale, E. Halgren (2009). Human Brain Mapping 2009.  * [[https://surfer.nmr.mgh.harvard.edu/pub/articles/HBM09-Destrieux-Sulcal.pdf|A sulcal depth-based anatomical parcellation of the cerebral cortex]], C. Destrieux, B. Fischl, A. Dale, E. Halgren (2009). Human Brain Mapping 2009.
 * [[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2937159/pdf/nihms213933.pdf|Automatic parcellation of human cortical gyri and sulci using standard anatomical nomenclature]], C. Destrieux, B. Fischl, A. Dale, E. Halgren (2010). NeuroImage 53(1): 1-15.


Methods


Published material describing the methods used in FreeSurfer (please cite our software!, see also boilerplate text):

surface reconstruction

inter-subject spherical averaging

thickness measurement

cortical parcellation

subcortical segmentation

longitudinal processing

related methodological papers

history


Citations


Published material citing Freesurfer:

(If you have a citation you would like to include in this list please e-mail your request to vinke[at]nmr.mgh.harvard.edu)

cortical thickness

cortical surface area

local gyrification index (LGI)

clinical biomarkers

volumetric

white matter

longitudinal

entorhinal cortex

  • Detection of entorhinal layer II using 7 Tesla magnetic resonance imaging, Augustinack, Jean C., Andre J. W. van der Kouwe, Megan L. Blackwell, David H. Salat, Christopher J. Wiggins, Matthew P. Frosch, Graham C. Wiggins, Andreas Potthast, Lawrence L. Wald, Bruce R. Fischl, (2005). Annals of Neurology, 57(4):489-494.

  • Predicting the location of entorhinal cortex from MRI, B. Fischl, A. A. Stevens, N. Rajendran, B. T. T.Yeo, D. N. Greve, K. V. Leemput, J. R. Polimeni, S. Kakunoori, R. L. Buckner, J. Pacheco, D. H. Salat, J. Melcher, M. P. Frosch, B. T. Hyman, P. E. Grant, B. R. Rosen, A. J.W. van der Kouwe, G. C. Wiggins, L. L. Wald, J. C. Augustinack, (2009). NeuroImage (2009).

cortical surface shape and folding analysis

surface-based analysis (SBA)

SBA vs. VBM

diffusion analysis

CBF - cerebral blood flow

cortical flat-patches

FS-FAST

validation / evaluation

Publications (last edited 2021-05-03 08:49:05 by DevaniCordero)