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 * [[http://www.sciencedirect.com/science/article/pii/S1053811914000895|Hippocampal volume change measurement: Quantitative assessment of the reproducibility of expert manual outlining and the automated methods FreeSurfer and FIRST]], Emma Muldera, Remko de Jonga, Dirk Knolc, Ronald van Schijndela, Keith Covere, Pieter Visserf, Frederik Barkhofa, Hugo Vrenkenb, for the Alzheimer's Disease Neuroimaging Initiative 1 (2014). NeuroImage Volume 92, 15 May 2014, Pages 169–181. DOI: 10.1016/j.neuroimage.2014.01.058.


Published material describing the methods used in FreeSurfer (please cite our software!, see also boilerplate text):

surface reconstruction

inter-subject spherical averaging

thickness measurement

cortical parcellation

subcortical segmentation

longitudinal processing

tracts constrained by underlying anatomy (TRACULA)

related methodological papers


  • FreeSurfer, Fischl B (2012). NeuroImage 62(2):774-781.


Published material citing Freesurfer:

(If you have a citation you would like to include in this list please e-mail your request to vinke[at]nmr.mgh.harvard.edu)

cortical thickness

cortical surface area

local gyrification index (LGI)

clinical biomarkers


white matter


tracts constrained by underlying anatomy (TRACULA)

cortical region localization

cortical surface shape and folding analysis

surface-based analysis (SBA)

ROI-based analysis


diffusion analysis

CBF - cerebral blood flow

cortical flat-patches


validation / evaluation

Publications (last edited 2021-05-03 08:49:05 by DevaniCordero)