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 * [[http://www.ncbi.nlm.nih.gov/pubmed/24954840|Cross-validation of serial optical coherence scanning and diffusion tensor imaging: A study on neural fiber maps in human medulla oblongata]], Wang H, Zhu J, Reuter M, Vinke L, Yendiki A, Boas D, Fischl B, Akkin T, (2014). !NeuroImage, In press, doi: 10.1016/j.neuroimage.2014.06.032.
 * [[http://www.ncbi.nlm.nih.gov/pubmed/24041872|Blockface histology with optical coherence tomography: a comparison with Nissl staining]], Magnain C, Augustinack J, Reuter M, Wachinger C, Frosch M, Ragan T, Akkin T, Wedeen V, Boas D, Fischl B, (2014). !NeuroImage, In press, doi: 10.1016/j.neuroimage.2013.08.072.


Published material describing the methods used in FreeSurfer (please cite our software!, see also boilerplate text):

surface reconstruction

inter-subject spherical averaging

thickness measurement

cortical parcellation

subcortical segmentation

longitudinal processing

tracts constrained by underlying anatomy (TRACULA)

optical coherence tomography

related methodological papers


  • FreeSurfer, Fischl B (2012). NeuroImage 62(2):774-781.


Published material citing Freesurfer:

(If you have a citation you would like to include in this list please e-mail your request to vinke[at]nmr.mgh.harvard.edu)

cortical thickness

cortical surface area

local gyrification index (LGI)

clinical biomarkers


white matter


tracts constrained by underlying anatomy (TRACULA)

cortical region localization

cortical surface shape and folding analysis

surface-based analysis (SBA)

ROI-based analysis


diffusion analysis

CBF - cerebral blood flow

cortical flat-patches


validation / evaluation

Publications (last edited 2021-05-03 08:49:05 by DevaniCordero)