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=== positron emission tomography ===
 * [[https://surfer.nmr.mgh.harvard.edu/pub/articles/2014/greve.2014.ni.surface-km.pdf|Cortical surface-based analysis reduces bias and variance in kinetic modeling of brain PET data]], Greve D, Svarer C, Fisher P, Feng L, Hansen A, Baare W, Rosen B, Fischl B, Knudsen G, (2014). !NeuroImage, 92:225–236. doi: 10.1016/j.neuroimage.2013.12.021.


Published material describing the methods used in FreeSurfer (please cite our software!, see also boilerplate text):

surface reconstruction

inter-subject spherical averaging

thickness measurement

cortical parcellation

subcortical segmentation

longitudinal processing

tracts constrained by underlying anatomy (TRACULA)

optical coherence tomography

positron emission tomography

related methodological papers


  • FreeSurfer, Fischl B (2012). NeuroImage 62(2):774-781.


Published material citing Freesurfer:

(If you have a citation you would like to include in this list please e-mail your request to vinke[at]nmr.mgh.harvard.edu)

cortical thickness

cortical surface area

local gyrification index (LGI)

clinical biomarkers


white matter


tracts constrained by underlying anatomy (TRACULA)

cortical region localization

cortical surface shape and folding analysis

surface-based analysis (SBA)

ROI-based analysis


diffusion analysis

CBF - cerebral blood flow

cortical flat-patches


validation / evaluation

Publications (last edited 2021-05-03 08:49:05 by DevaniCordero)