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 * [[http://link.springer.com/article/10.1007/s12021-014-9229-2|Validation of FreeSurfer-Estimated Brain Cortical Thickness: Comparison with Histologic Measurements.]] Cardinale F., Chinnici G., Bramerio M., Mai R., Sartori I., Cossu M., Lo Russo G., Castana L., Colombo N., Caborni C., De Momi E., Ferrigno G. (2014). Neuroinformatics, doi: 10.1007/s12021-014-9229-2


Published material describing the methods used in FreeSurfer (please cite our software!, see also boilerplate text):

surface reconstruction

inter-subject spherical averaging

thickness measurement

cortical parcellation

subcortical segmentation

longitudinal processing

tracts constrained by underlying anatomy (TRACULA)

optical coherence tomography

positron emission tomography

related methodological papers


  • FreeSurfer, Fischl B (2012). NeuroImage 62(2):774-781.


Published material citing Freesurfer:

(If you have a citation you would like to include in this list please e-mail your request to vinke[at]nmr.mgh.harvard.edu)

cortical thickness

cortical surface area

local gyrification index (LGI)

clinical biomarkers


white matter


tracts constrained by underlying anatomy (TRACULA)

cortical region localization

cortical surface shape and folding analysis

surface-based analysis (SBA)

ROI-based analysis


diffusion analysis

CBF - cerebral blood flow

cortical flat-patches


validation / evaluation

Publications (last edited 2021-05-03 08:49:05 by DevaniCordero)