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=== local gyrification index (LGI) ===
 * [[http://ltswww.epfl.ch/~schaer/Schaer_TMI.pdf|A Surface-Based Approach to Quantify Local Cortical Gyrification]], Schaer, M., M. Bach Cuadra, L. Tamarit, F. Lazeyras, S. Eliez, and J.P. Thiran (2008). IEEE Transactions on Medical Imaging, Vol. 27, No. 2, February 2008. See also: [[http://www.jove.com/video/3417|JoVE video]]


Published material describing the methods used in FreeSurfer (please cite our software!, see also boilerplate text):

surface reconstruction

inter-subject spherical averaging

thickness measurement

cortical parcellation

subcortical segmentation

longitudinal processing

tracts constrained by underlying anatomy (TRACULA)

local gyrification index (LGI)

optical coherence tomography

positron emission tomography

related methodological papers


  • FreeSurfer, Fischl B (2012). NeuroImage 62(2):774-781.


Published material citing Freesurfer:

(If you have a citation you would like to include in this list please e-mail your request to vinke[at]nmr.mgh.harvard.edu)

cortical thickness

cortical surface area

local gyrification index (LGI)

clinical biomarkers


white matter


tracts constrained by underlying anatomy (TRACULA)

cortical region localization

cortical surface shape and folding analysis

surface-based analysis (SBA)

ROI-based analysis


diffusion analysis

CBF - cerebral blood flow

cortical flat-patches


validation / evaluation

Publications (last edited 2021-05-03 08:49:05 by DevaniCordero)